Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15996 167 3e-35 seq22580 134 2e-25 seq7876 131 2e-24 seq17668 125 9e-23 seq6324 109 7e-18 seq8165 104 3e-16 seq25531 89.7 6e-12 seq30050 87.8 2e-11 seq195 86.0 8e-11 >seq15996 Length=6831 Score = 167 bits (184), Expect = 3e-35 Identities = 219/296 (74%), Gaps = 18/296 (6%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| |||||||||| ||| |||| | |||||||| ||||| |||||||| Sbjct 1374 CTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGA 1315 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGG-CGCCGGCGG-CGC--GCACCTTGTGCGCGGCAA 1630180 | |||||||||||| || | |||| | ||| || || ||| || | || | Sbjct 1314 GTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGA----CCGCCA 1259 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 |||||| || |||||||||||||||||||| || ||||| || ||||||||||| |||| Sbjct 1258 CGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGC 1199 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGGGTG 1630295 | ||||| |||| |||||||| | | || ||||| ||| || | || | | || Sbjct 1198 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTGTTG 1140 Query 1630296 CGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACA 1630351 || || ||||||||||||||||| | || ||||||| ||| | ||||| Sbjct 1139 ----GTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088 Score = 111 bits (122), Expect = 2e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| |||||| | || || | ||| || | Sbjct 2464 TCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTC 2405 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 |||||||||| | ||| |||||||||||| ||||| | | ||| | |||| |||||| Sbjct 2404 CCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 2345 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 2344 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 2285 Query 1627475 CGTGCT 1627480 |||||| Sbjct 2284 CGTGCT 2279 Score = 86.0 bits (94), Expect = 8e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1628378 AGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCA 1628437 ||||||||| ||| ||||| |||| |||||| | || |||||||| | || Sbjct 1597 AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 1538 Query 1628438 CCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGT 1628497 || | | ||| || ||||| |||||| ||||| || ||||| | |||| | Sbjct 1537 CCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCT 1478 Query 1628498 TCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACG 1628557 ||||||||| ||| |||||| || || || || |||| | | |||| |||||| | Sbjct 1477 GCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGG 1418 Query 1628558 GCTCCAGGTAGCAGGCAAAGGCGCC 1628582 |||||||||| |||||| || || Sbjct 1417 GCTCCAGGTACATGGCAAACGCTCC 1393 >seq22580 Length=18100 Score = 134 bits (148), Expect = 2e-25 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 || |||||||||||||| | | | ||| ||| ||||||||| |||| ||||||||| Sbjct 18099 ACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGG 18040 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||| | |||| || |||| ||||||||||| || |||||||||| ||| Sbjct 18039 GAGGCCTCCCCGGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATG 17980 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 | |||| ||||||||| ||||||||| |||||||| | ||||||||||| Sbjct 17979 GCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCATCACCTTGTAGA 17928 >seq7876 Length=24251 Score = 131 bits (144), Expect = 2e-24 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||| ||||||||||||||||| | | | ||| ||| ||||||||| |||| || Sbjct 18523 CAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGC 18464 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||||||| || ||| | ||||||| || | |||||| | ||||| |||||||||| Sbjct 18463 CAGACGGGAGGACTCACCGGCGATGCGCTCAAAGATGTCGCTCACAAAGGAGTTCATGAT 18404 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| |||||| || ||||||||| |||||||| || |||||||| Sbjct 18403 GCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGGACCTTGTA 18347 >seq17668 Length=3218 Score = 125 bits (138), Expect = 9e-23 Identities = 150/203 (74%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATC-TCGCGCGTGCCG 1254401 || ||||||| || ||| ||| | |||||| ||||||||||||||| || | | | | Sbjct 1524 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCCTCCCTGGAGGTG 1583 Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 || ||| ||||||||| |||| ||||||||| ||| | ||||||| || | Sbjct 1584 ATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGC------GGCGATGCGCTCAAAG 1637 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||| | ||||| |||||||||| ||| | |||| ||| ||||| || ||| Sbjct 1638 ATGTCGCTCACAAAGGAGTTCATGATGCCCATAGCCTTGGAGGAAATGCCGGTATCAGGG 1697 Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||||||||||| Sbjct 1698 TGGACCTGCTTCAGCACCTTGTA 1720 >seq6324 Length=36621 Score = 109 bits (120), Expect = 7e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1254382 TCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCT 1254441 |||||||||| | | | ||| ||| | |||||| |||||||||| || || | Sbjct 702 TCTGGATCTCCCTGGAGGTGATGGTGGATCTCTTGTTGTAGTGCGCCAGGCGCGACGCTT 643 Query 1254442 CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGT 1254501 | | ||||||| |||| ||||||||||||||||||||||||| ||| | |||| Sbjct 642 CCCCGGCGATGCGCTCGAAAATGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGG 583 Query 1254502 TGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||||| ||| ||| ||||||||||| || |||||||| || Sbjct 582 AGGAGATCCCCGTGTCTGGGTGCACCTGTTTCAGCACCTTATA 540 >seq8165 Length=7955 Score = 104 bits (114), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 1254381 GTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCC 1254440 ||||||||||| | | | ||| ||| ||||||||| |||| ||||||||| |||| Sbjct 7955 GTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCC 7896 Query 1254441 TCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG 1254500 || | | ||||||| || | ||||| || || || |||||||| | ||| | |||| Sbjct 7895 TCAGCGGCGATGCGCTCAAAAATGTCATTCAC-AAGGAGTTCATAATGCTCATGGCCTTG 7837 Query 1254501 TTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||| |||||| || ||||| || ||||||||||| Sbjct 7836 GACGAGATGCCGGTGTCGGGATGGACCTGTTTCAGCACCTTGTA 7793 >seq25531 Length=26544 Score = 89.7 bits (98), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 22117 ACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 22176 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| |||||||| |||| | | | | | Sbjct 22177 CTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGAGACTCAATG 22236 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 22237 ATGGCGTACCACAGCTG 22253 >seq30050 Length=2981 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 |||||||| |||||||||| ||| ||||||||||| |||||||||| ||| | | ||| Sbjct 788 ACCTCCTCTGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 729 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || ||| ||||||| ||| |||||| ||||| || Sbjct 728 TACTTGATGGGGAAGATGACGAAGCGGCGAGGGTTTTC 691 >seq195 Length=37188 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 20274 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 20215 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | || ||||||||| | ||||| || |||||||| Sbjct 20214 ATGATCAAAGGCAAAACCCCGGAGGAGATCAGGAAGACTTTCAACATCAA 20165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104265951318804