Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 167 3e-35
seq22580 134 2e-25
seq7876 131 2e-24
seq17668 125 9e-23
seq6324 109 7e-18
seq8165 104 3e-16
seq25531 89.7 6e-12
seq30050 87.8 2e-11
seq195 86.0 8e-11
>seq15996
Length=6831
Score = 167 bits (184), Expect = 3e-35
Identities = 219/296 (74%), Gaps = 18/296 (6%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| |||||||||| ||| |||| | |||||||| ||||| ||||||||
Sbjct 1374 CTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGA 1315
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGG-CGCCGGCGG-CGC--GCACCTTGTGCGCGGCAA 1630180
| |||||||||||| || | |||| | ||| || || ||| || | || |
Sbjct 1314 GTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGA----CCGCCA 1259
Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240
|||||| || |||||||||||||||||||| || ||||| || ||||||||||| ||||
Sbjct 1258 CGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGC 1199
Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGGGTG 1630295
| ||||| |||| |||||||| | | || ||||| ||| || | || | | ||
Sbjct 1198 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTGTTG 1140
Query 1630296 CGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACA 1630351
|| || ||||||||||||||||| | || ||||||| ||| | |||||
Sbjct 1139 ----GTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088
Score = 111 bits (122), Expect = 2e-18
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354
||||||| || | | || ||||| |||| |||||| | || || | ||| || |
Sbjct 2464 TCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTC 2405
Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414
|||||||||| | ||| |||||||||||| ||||| | | ||| | |||| ||||||
Sbjct 2404 CCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 2345
Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474
|||||||||| | || | |||||||||||| | |||| || || ||| | || ||
Sbjct 2344 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 2285
Query 1627475 CGTGCT 1627480
||||||
Sbjct 2284 CGTGCT 2279
Score = 86.0 bits (94), Expect = 8e-11
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 1628378 AGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCA 1628437
||||||||| ||| ||||| |||| |||||| | || |||||||| | ||
Sbjct 1597 AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 1538
Query 1628438 CCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGT 1628497
|| | | ||| || ||||| |||||| ||||| || ||||| | |||| |
Sbjct 1537 CCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCT 1478
Query 1628498 TCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACG 1628557
||||||||| ||| |||||| || || || || |||| | | |||| |||||| |
Sbjct 1477 GCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGG 1418
Query 1628558 GCTCCAGGTAGCAGGCAAAGGCGCC 1628582
|||||||||| |||||| || ||
Sbjct 1417 GCTCCAGGTACATGGCAAACGCTCC 1393
>seq22580
Length=18100
Score = 134 bits (148), Expect = 2e-25
Identities = 133/172 (77%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434
|| |||||||||||||| | | | ||| ||| ||||||||| |||| |||||||||
Sbjct 18099 ACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGG 18040
Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494
|||||| | |||| || |||| ||||||||||| || |||||||||| |||
Sbjct 18039 GAGGCCTCCCCGGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATG 17980
Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546
| |||| ||||||||| ||||||||| |||||||| | |||||||||||
Sbjct 17979 GCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCATCACCTTGTAGA 17928
>seq7876
Length=24251
Score = 131 bits (144), Expect = 2e-24
Identities = 135/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427
|||||| ||||||||||||||||| | | | ||| ||| ||||||||| |||| ||
Sbjct 18523 CAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGC 18464
Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487
||||||| || ||| | ||||||| || | |||||| | ||||| ||||||||||
Sbjct 18463 CAGACGGGAGGACTCACCGGCGATGCGCTCAAAGATGTCGCTCACAAAGGAGTTCATGAT 18404
Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
||| | |||| |||||| || ||||||||| |||||||| || ||||||||
Sbjct 18403 GCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGGACCTTGTA 18347
>seq17668
Length=3218
Score = 125 bits (138), Expect = 9e-23
Identities = 150/203 (74%), Gaps = 7/203 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATC-TCGCGCGTGCCG 1254401
|| ||||||| || ||| ||| | |||||| ||||||||||||||| || | | | |
Sbjct 1524 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCCTCCCTGGAGGTG 1583
Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461
|| ||| ||||||||| |||| ||||||||| ||| | ||||||| || |
Sbjct 1584 ATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGC------GGCGATGCGCTCAAAG 1637
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
|||||| | ||||| |||||||||| ||| | |||| ||| ||||| || |||
Sbjct 1638 ATGTCGCTCACAAAGGAGTTCATGATGCCCATAGCCTTGGAGGAAATGCCGGTATCAGGG 1697
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| |||||||||||
Sbjct 1698 TGGACCTGCTTCAGCACCTTGTA 1720
>seq6324
Length=36621
Score = 109 bits (120), Expect = 7e-18
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 1254382 TCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCT 1254441
|||||||||| | | | ||| ||| | |||||| |||||||||| || || |
Sbjct 702 TCTGGATCTCCCTGGAGGTGATGGTGGATCTCTTGTTGTAGTGCGCCAGGCGCGACGCTT 643
Query 1254442 CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGT 1254501
| | ||||||| |||| ||||||||||||||||||||||||| ||| | ||||
Sbjct 642 CCCCGGCGATGCGCTCGAAAATGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGG 583
Query 1254502 TGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|||||| ||| ||| ||||||||||| || |||||||| ||
Sbjct 582 AGGAGATCCCCGTGTCTGGGTGCACCTGTTTCAGCACCTTATA 540
>seq8165
Length=7955
Score = 104 bits (114), Expect = 3e-16
Identities = 122/164 (74%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 1254381 GTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCC 1254440
||||||||||| | | | ||| ||| ||||||||| |||| ||||||||| ||||
Sbjct 7955 GTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCC 7896
Query 1254441 TCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG 1254500
|| | | ||||||| || | ||||| || || || |||||||| | ||| | ||||
Sbjct 7895 TCAGCGGCGATGCGCTCAAAAATGTCATTCAC-AAGGAGTTCATAATGCTCATGGCCTTG 7837
Query 1254501 TTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|||||||| |||||| || ||||| || |||||||||||
Sbjct 7836 GACGAGATGCCGGTGTCGGGATGGACCTGTTTCAGCACCTTGTA 7793
>seq25531
Length=26544
Score = 89.7 bits (98), Expect = 6e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
|| ||||| |||||||| ||| || | | || ||||| |||||||||||| | ||
Sbjct 22117 ACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 22176
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| ||||||||||| ||||||||| |||| |||||||| |||| | | | | |
Sbjct 22177 CTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGAGACTCAATG 22236
Query 1628287 ATGGCCGACCAGATCTG 1628303
||||| |||| | |||
Sbjct 22237 ATGGCGTACCACAGCTG 22253
>seq30050
Length=2981
Score = 87.8 bits (96), Expect = 2e-11
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890
|||||||| |||||||||| ||| ||||||||||| |||||||||| ||| | | |||
Sbjct 788 ACCTCCTCTGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 729
Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928
|| ||| ||||||| ||| |||||| ||||| ||
Sbjct 728 TACTTGATGGGGAAGATGACGAAGCGGCGAGGGTTTTC 691
>seq195
Length=37188
Score = 86.0 bits (94), Expect = 8e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||| | |||||||| ||| | ||| | |||||| | |||||||||
Sbjct 20274 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 20215
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
|||||||| ||||| | || ||||||||| | ||||| || ||||||||
Sbjct 20214 ATGATCAAAGGCAAAACCCCGGAGGAGATCAGGAAGACTTTCAACATCAA 20165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104265951318804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |