Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 187 2e-42
seq471 109 5e-19
>seq15996
Length=6831
Score = 187 bits (206), Expect = 2e-42
Identities = 951/1491 (64%), Gaps = 55/1491 (4%)
Strand=Plus/Minus
Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599
||| |||||| ||||| | | || | || |||||||| ||||| ||||| || ||||
Sbjct 2385 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 2326
Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGT 138657
|| || ||||| |||| || || |||| | ||||| |||| || |
Sbjct 2325 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCTT 2269
Query 138658 -TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716
||||| || | | ||||||| || ||| | || | || | |||||| ||||||||
Sbjct 2268 CTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTG 2209
Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776
| || ||| || | ||| ||||||||||| ||||| || | ||| ||
Sbjct 2208 GAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 2149
Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836
|| |||| ||||||||| || || | ||||| || || || || || || ||
Sbjct 2148 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAG 2089
Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896
|| | ||||||| ||| ||| |||| ||| | | |||| ||||| |||| ||
Sbjct 2088 CAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACC 2029
Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GAT 138953
|||||||| | ||||| || | |||||| || ||| || | ||||| |
Sbjct 2028 CTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGAC---TTCTCCGCTTCAGGCAC 1972
Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013
|| || ||||| | ||||| || ||||| || ||| |||| || || ||| |
Sbjct 1971 TGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAA 1912
Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073
| || | || ||| || | || ||| || | ||||| ||| ||||
Sbjct 1911 CGCTAGTTTTTTAAAGTCAAAAGT----CCG--CTCAGGGGTGACGT--ACA----TGTT 1864
Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133
|| || ||||| | || |||||||| || || ||| | | |||| || || ||
Sbjct 1863 GAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTAT 1804
Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193
||| | || | || || | ||||| || || | ||| || || ||||| || | |||
Sbjct 1803 TTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 1744
Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAA 139253
|| || |||||||| ||||| ||||| || || |||||| || | ||| ||||||
Sbjct 1743 GCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGC 1684
Query 139254 TTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTT 139311
| ||| | | ||| | | |||| | | | | | || ||| ||| |
Sbjct 1683 GTGCCACACCTGCTGAGCCTTCA--CCACGCGCTTGACCCTCCCCTCCTTCTCATACGTG 1626
Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCA 139368
||| || | ||||| || | | || | | |||| || || | |||| ||
Sbjct 1625 GTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCACTCGTTC 1569
Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428
|||||||| || ||||| | ||| || || | | |||||||||| || || |||
Sbjct 1568 GGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATC 1509
Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488
|||| ||| | | | || | ||| ||| || ||| || |||| ||||
Sbjct 1508 CACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGC 1449
Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---T 139545
| ||||| ||||| ||||| |||||| || ||||| || ||||| | || ||
Sbjct 1448 TCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGC 1389
Query 139546 TTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605
|| ||||| || || ||||||| || | | || ||| | || | || ||| ||
Sbjct 1388 CTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGG 1329
Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCTCGGAC 139661
| || ||| | | | |||||||||| |||| || || ||| |||||
Sbjct 1328 ACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGT--CGA--TCGGAT 1273
Query 139662 GTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT- 139719
| || | || | ||||||||| ||| | | ||||| || | | || | || |
Sbjct 1272 G-CAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACT-GCTTC 1215
Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779
| || ||||| || ||| ||||||||||||| ||| | || ||| ||||| ||
Sbjct 1214 AGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC 1155
Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839
|| || || || || || || || || || || ||||| |||||| |
Sbjct 1154 AGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTC 1095
Query 139840 TTCGACATCAATTCGTACGTTTCGATGGC-GCTCACAATATCCCTTCCGTGGATACCGAC 139898
| ||||| || | |||||| || ||||| || | || ||| || |||||| |||||
Sbjct 1094 TCCGACAGCAGGTTGTACGTCTCAATGGCTGCGC-TGATGTCCGTTTTGTGGATCCCGAC 1036
Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958
||| |||| ||| ||||| || || || || ||||| ||| | ||| || |||
Sbjct 1035 AGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAG 976
Query 139959 ATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007
|| |||| ||| || |||||| |||| ||| | | ||| |||||||
Sbjct 975 GTAGGACCG--CTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927
>seq471
Length=23154
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || |||||||| || || || || || || || |||
Sbjct 16641 GATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 16700
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| |||||||| || || || ||||| || || || ||
Sbjct 16701 CGACACCATCGAGAACGTCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCA 16760
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||| ||||| ||||||||||| || | | | || || || ||
Sbjct 16761 GCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 16820
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| || || || ||| ||||| | || || | |||||
Sbjct 16821 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 16868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449700702315360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |