Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq15996 187 2e-42 seq471 109 5e-19 >seq15996 Length=6831 Score = 187 bits (206), Expect = 2e-42 Identities = 951/1491 (64%), Gaps = 55/1491 (4%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 2385 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 2326 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGT 138657 || || ||||| |||| || || |||| | ||||| |||| || | Sbjct 2325 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCTT 2269 Query 138658 -TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||| || | | ||||||| || ||| | || | || | |||||| |||||||| Sbjct 2268 CTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTG 2209 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | || ||| || | ||| ||||||||||| ||||| || | ||| || Sbjct 2208 GAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 2149 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 || |||| ||||||||| || || | ||||| || || || || || || || Sbjct 2148 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAG 2089 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 || | ||||||| ||| ||| |||| ||| | | |||| ||||| |||| || Sbjct 2088 CAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACC 2029 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GAT 138953 |||||||| | ||||| || | |||||| || ||| || | ||||| | Sbjct 2028 CTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGAC---TTCTCCGCTTCAGGCAC 1972 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 || || ||||| | ||||| || ||||| || ||| |||| || || ||| | Sbjct 1971 TGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAA 1912 Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073 | || | || ||| || | || ||| || | ||||| ||| |||| Sbjct 1911 CGCTAGTTTTTTAAAGTCAAAAGT----CCG--CTCAGGGGTGACGT--ACA----TGTT 1864 Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133 || || ||||| | || |||||||| || || ||| | | |||| || || || Sbjct 1863 GAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTAT 1804 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||| | || | || || | ||||| || || | ||| || || ||||| || | ||| Sbjct 1803 TTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 1744 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAA 139253 || || |||||||| ||||| ||||| || || |||||| || | ||| |||||| Sbjct 1743 GCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGC 1684 Query 139254 TTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTT 139311 | ||| | | ||| | | |||| | | | | | || ||| ||| | Sbjct 1683 GTGCCACACCTGCTGAGCCTTCA--CCACGCGCTTGACCCTCCCCTCCTTCTCATACGTG 1626 Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCA 139368 ||| || | ||||| || | | || | | |||| || || | |||| || Sbjct 1625 GTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCACTCGTTC 1569 Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 |||||||| || ||||| | ||| || || | | |||||||||| || || ||| Sbjct 1568 GGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATC 1509 Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488 |||| ||| | | | || | ||| ||| || ||| || |||| |||| Sbjct 1508 CACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGC 1449 Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---T 139545 | ||||| ||||| ||||| |||||| || ||||| || ||||| | || || Sbjct 1448 TCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGC 1389 Query 139546 TTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605 || ||||| || || ||||||| || | | || ||| | || | || ||| || Sbjct 1388 CTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGG 1329 Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCTCGGAC 139661 | || ||| | | | |||||||||| |||| || || ||| ||||| Sbjct 1328 ACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGT--CGA--TCGGAT 1273 Query 139662 GTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT- 139719 | || | || | ||||||||| ||| | | ||||| || | | || | || | Sbjct 1272 G-CAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACT-GCTTC 1215 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | || ||||| || ||| ||||||||||||| ||| | || ||| ||||| || Sbjct 1214 AGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC 1155 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839 || || || || || || || || || || || ||||| |||||| | Sbjct 1154 AGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTC 1095 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGC-GCTCACAATATCCCTTCCGTGGATACCGAC 139898 | ||||| || | |||||| || ||||| || | || ||| || |||||| ||||| Sbjct 1094 TCCGACAGCAGGTTGTACGTCTCAATGGCTGCGC-TGATGTCCGTTTTGTGGATCCCGAC 1036 Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958 ||| |||| ||| ||||| || || || || ||||| ||| | ||| || ||| Sbjct 1035 AGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAG 976 Query 139959 ATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 || |||| ||| || |||||| |||| ||| | | ||| ||||||| Sbjct 975 GTAGGACCG--CTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927 >seq471 Length=23154 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 16641 GATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 16700 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||| || || || ||||| || || || || Sbjct 16701 CGACACCATCGAGAACGTCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCA 16760 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| ||||| ||||||||||| || | | | || || || || Sbjct 16761 GCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 16820 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| ||||| | || || | ||||| Sbjct 16821 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 16868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449700702315360