Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17668 156 7e-32 seq15996 145 1e-28 seq6324 136 6e-26 seq7876 134 2e-25 seq22580 125 1e-22 seq8165 98.7 2e-14 seq12033 95.1 2e-13 seq30050 87.8 3e-11 seq25531 87.8 3e-11 seq8166 87.8 3e-11 >seq17668 Length=3218 Score = 156 bits (172), Expect = 7e-32 Identities = 182/245 (74%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| ||||||| || ||| ||| Sbjct 1485 TGTACTTGGTCACAGCCTTTGTTCCCTCAGACACAGCGTGCTTGGCCAGCTCACCGGGCA 1544 Query 1485530 TGATCAGGCGCACGGCGGTCTGGAT-CTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | |||||| |||||||||||||| ||| | || | ||| ||| ||||||||| | Sbjct 1545 GCAGCAGGCGGACGGCGGTCTGGATCCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAG 1604 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||| | ||||||| || | |||||| | ||||| |||||| Sbjct 1605 TGAGCCAGACGGGAGGC------GGCGATGCGCTCAAAGATGTCGCTCACAAAGGAGTTC 1658 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||| ||||| || ||||| |||||||| ||||||||| Sbjct 1659 ATGATGCCCATAGCCTTGGAGGAAATGCCGGTATCAGGGTGGACCTGCTTCAGCACCTTG 1718 Query 1485709 TAAAC 1485713 || || Sbjct 1719 TACAC 1723 >seq15996 Length=6831 Score = 145 bits (160), Expect = 1e-28 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || |||||||||| ||| |||| | |||||||| || || |||||||| Sbjct 1374 CTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGA 1315 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||||||| || | |||| |||| | || | | | || | ||| Sbjct 1314 GTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCC 1255 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||||| |||||||||||| || |||| |||||||| ||||| ||||| || Sbjct 1254 GATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTC 1195 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||| |||| |||||||| | | ||| ||||| Sbjct 1194 GATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 1162 Score = 104 bits (114), Expect = 4e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || |||||| | || || | ||| || | Sbjct 2464 TCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTC 2405 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 |||||||||| | ||| |||||||||||||| ||| | | ||| | |||| |||||| Sbjct 2404 CCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 2345 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||||||||| | |||| ||||| ||| | || || Sbjct 2344 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 2285 Query 2069744 CGTAC-TGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781 ||| | || || | | | || |||||| | ||||||| Sbjct 2284 CGTGCTTGGCG-ATCTTCTCCTTCAGGGCCTTCCAGTCC 2247 Score = 98.7 bits (108), Expect = 2e-14 Identities = 249/385 (65%), Gaps = 0/385 (0%) Strand=Plus/Minus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||||||||| |||||||||||||| || |||| |||||| |||| ||||||||| | Sbjct 1777 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1718 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCG 2071729 ||| ||| || || |||| | | || ||||| ||| | || | || |||| Sbjct 1717 GCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCA 1658 Query 2071730 AGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGT 2071789 | | | | | |||| | || || || | | || Sbjct 1657 CGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCC 1598 Query 2071790 GGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCA 2071849 |||||||| ||| ||||| |||| ||| || | || |||||||| | || Sbjct 1597 AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 1538 Query 2071850 CCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGT 2071909 |||| | ||| ||||||||| |||||| | |||| || || || | |||| | Sbjct 1537 CCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCT 1478 Query 2071910 TCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACG 2071969 ||||||||| ||| |||||| ||||| || || |||| | | |||| |||||| | Sbjct 1477 GCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGG 1418 Query 2071970 GCTCCAGGTAGCAGGCAAAGGCGCC 2071994 |||||||||| |||||| || || Sbjct 1417 GCTCCAGGTACATGGCAAACGCTCC 1393 >seq6324 Length=36621 Score = 136 bits (150), Expect = 6e-26 Identities = 175/247 (71%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| || Sbjct 783 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCN 724 Query 1485530 TGATCAGGCGCACGGCGG---TCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 |||||||||| | || | ||| ||| | |||||| Sbjct 723 NNNNNNNNNNNNNNNNNNNNNTCTGGATCTCCCTGGAGGTGATGGTGGATCTCTTGTTGT 664 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||||||||| || || | ||||||| |||| ||||||||||||||||||| Sbjct 663 AGTGCGCCAGGCGCGACGCTTCCCCGGCGATGCGCTCGAAAATGTCGTTGACAAACGAGT 604 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||| | ||| |||||| ||| ||| ||||||||||| || ||||||| Sbjct 603 TCATGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGTGCACCTGTTTCAGCACCT 544 Query 1485707 TGTAAAC 1485713 | || || Sbjct 543 TATACAC 537 >seq7876 Length=24251 Score = 134 bits (148), Expect = 2e-25 Identities = 179/246 (73%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCC-TTGGTACCCTCTGAGACGGC-GTGCCTGGCCAGTTCGCCGCG 1485527 |||||||||| || ||| || || || | || || || |||| | ||||| || | || Sbjct 18584 TGTACTTGGTCACAGCCCTTTGTCCCTCCAGACACAGCCGTGCTTAGCCAGCTCACAGC- 18526 Query 1485528 CATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT 1485587 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| Sbjct 18525 ----AGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTA 18470 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | ||||| ||| || ||| | ||||||| || | |||||| | ||||| ||||| Sbjct 18469 GTGAGCCAGACGGGAGGACTCACCGGCGATGCGCTCAAAGATGTCGCTCACAAAGGAGTT 18410 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| |||||| || ||||||||| |||||||| || ||||| Sbjct 18409 CATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGGACCTT 18350 Query 1485708 GTAAAC 1485713 ||| || Sbjct 18349 GTACAC 18344 >seq22580 Length=18100 Score = 125 bits (138), Expect = 1e-22 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1485541 ACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGG 1485600 || |||||||||||||| | || | ||| ||| ||||||||| | | ||||| ||| Sbjct 18099 ACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGG 18040 Query 1485601 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATC 1485660 |||||| | |||| || |||| ||||||||||| || ||||||||||| ||| Sbjct 18039 GAGGCCTCCCCGGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATG 17980 Query 1485661 GATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAG 1485717 | ||| ||||||||| ||||||||| |||||||| | ||||||||| ||| || Sbjct 17979 GCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCATCACCTTGTAGACATAG 17923 >seq8165 Length=7955 Score = 98.7 bits (108), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCC 1485606 ||||||||||| | || | ||| ||| ||||||||| | | ||||| ||| |||| Sbjct 7955 GTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCC 7896 Query 1485607 TCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTG 1485666 || | | ||||||| || | ||||| || || || |||||||| || ||| | ||| Sbjct 7895 TCAGCGGCGATGCGCTCAAAAATGTCATTCAC-AAGGAGTTCATAATGCTCATGGCCTTG 7837 Query 1485667 TTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAG 1485717 |||||||| |||||| || ||||| || ||||||||||| ||| || Sbjct 7836 GACGAGATGCCGGTGTCGGGATGGACCTGTTTCAGCACCTTGTACACATAG 7786 >seq12033 Length=96963 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| || ||||| ||||| || |||||||| | ||||| || ||| ||| Sbjct 17644 TGTACTTTGTGACCGCTTTGGTGCCCTCAGACACGGCGTGTTTAGCCAGCTCCCCGGGCA 17703 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||| | | || ||| ||| ||| || || || | Sbjct 17704 GCAGCAGCCTCACCGCAGTTTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 17762 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| || || ||| |||| | || | || ||||| || || |||||| Sbjct 17763 TGAGCCAGCCGGGACGCTTCTGTGGCGATCCTCTCAAACAGATCGTTTACGAAGGAGTTC 17822 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 ||||| ||| | | || | || || ||| ||| || || |||| Sbjct 17823 ATGATGCTCATGGCTCTGCTTGAAATCCCCGTGTCCGGATGAACCT 17868 >seq30050 Length=2981 Score = 87.8 bits (96), Expect = 3e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| | || ||| ||| |||||||| ||||||||| ||| ||||||||||||||| Sbjct 2943 TCTCTGCGGGCTCCCTGATGTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGT 2884 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||||| ||||| || || Sbjct 2883 TCTCCATGGCGATCTGGAAACCATAGAAACA 2853 >seq25531 Length=26544 Score = 87.8 bits (96), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||| |||||||| ||| || | |||||||||| |||||||||||||| || ||| Sbjct 22122 CTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 22181 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | ||||||||||| |||||||| |||| ||| ||||| |||| | | | |||||| Sbjct 22182 GCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGAGACTCAATGATGGC 22241 Query 2071704 CGACCA 2071709 |||| Sbjct 22242 GTACCA 22247 >seq8166 Length=7072 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||||||||| || ||||||||| | ||||| || || ||| Sbjct 92 TGTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCGTGCTTAGCCAGCTCACCAGGCA 33 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | ||| || || |||||||||||||| Sbjct 32 GCAGCAGACGGACAGCGGTCTGGATCTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912522013870268