Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq12683 181 8e-40 seq5514 111 1e-18 >seq12683 Length=55699 Score = 181 bits (200), Expect = 8e-40 Identities = 937/1474 (64%), Gaps = 22/1474 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| ||||| || |||||||| | || || || || || | Sbjct 9122 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCATCGATGTCGAAAGTTACCTCCAC 9181 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || |||| |||| || ||||| ||| | | ||| | ||||| || Sbjct 9182 CTGTGGTACACCTCGGGGAGCTGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTT 9241 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||||||| | | || || || | | || || Sbjct 9242 GTTGTCCTTGGTCATGGCTCTCTCACCCTCGTACACCTGAATCAGCACACCTGGCTGGTT 9301 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||| || || || | || ||||| | | ||| || || || ||||| | | | Sbjct 9302 ATCCGAGTATGTGGAGAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGTTTGA 9360 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||||| ||||| || || || | || ||||| || |||| || || | Sbjct 9361 TTAGAGGCGTCATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 9420 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || ||| | ||| | || ||||| || || | || Sbjct 9421 GCAGCAGCAGATCTTGGACGTTCTCGGAAGTGTCACCCATGAGGATAGCAGCCTGGACAG 9480 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 ||||||| || || || |||||||| || || | | | || || | | || || | Sbjct 9481 CAGCACCGTAGGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCCCTGCCGTTAA 9540 Query 281835 AAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 |||| | || || ||| | ||| | || ||||| | | || || ||||| | || Sbjct 9541 AAAAGTCCTGCAA-AAGCT-TCTGGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGAC 9598 Query 281893 AATTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 |||||||| || ||| || |||||||| || | ||| | | || ||||| |||| Sbjct 9599 TATTTCATGGACTCTG-GACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTT 9657 Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011 | || | || || | || || || ||||| || || || || || || Sbjct 9658 CCAGTGTTCCCCTGAAAAGCTCGGAGTTGAGCTCTTCAAAGCGTGCCCTTGT--GATGGA 9715 Query 282012 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 | || || || || || || |||| ||| || | ||||| ||| || || ||| Sbjct 9716 GGTGTAGAAGTCGATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTAGA 9775 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 282129 || || | | || || | ||||| ||||| | || || | | ||| | || | Sbjct 9776 GGACAGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGCCTCCTCACTGCTCT--CTTA 9833 Query 282130 TT--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAA 282185 || | | | || | || | |||||| || || || || ||| | ||| | || | Sbjct 9834 TTTTGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAA--ATGGTTGACCA 9891 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 || || ||||| || || || || | | || | ||| | || ||| | || | | Sbjct 9892 TCCGGTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCTCCCGCGGTGGCTTTCACCTCAA 9951 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | || || || | | || | | || ||| ||| || ||||| | |||||| | Sbjct 9952 AGATACCGTCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCAAGATCAAAGA 10011 Query 282306 TAAGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | || ||||| | | | | | || ||| || || || || |||| || || || Sbjct 10012 TGAGCACATTGCGCTCCCCTCTTTTACCTTTG-TCCAGGCCGTAAGCAATGGCTGCTGCT 10070 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || || || || || |||| |||||| || |||| || || || || || ||| Sbjct 10071 GTGGGCTCGTTGATGATCCTCAGAACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTG 10130 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 ||||| || || || ||||| ||||| || ||||| || || || |||| || |||| | Sbjct 10131 GCTTGCCTCTGGGAGTCGTTGAAATAAGCGGGAACTGTGATGACCGCATTTGACACTTTT 10190 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 | ||| | || || || | | ||||||||| || | ||| || || |||| Sbjct 10191 TGTCCCAGGTAGGCCTCAGCGATCTCCTTCATTTTAACTAGGACCATGGAGGAGATTTCC 10250 Query 282545 TCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 ||||| || | ||| | || || || || | | | || || | | Sbjct 10251 TCTGGGTAAAAGGCCTTAGTCTCCCCTTTGTACTCAACCTGGACTTTGGGCTTTCCATTA 10310 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 || | || || || |||||||| |||||| || || || ||| | ||| ||||| Sbjct 10311 TCACTGATCACCTTGAATGGCCAGAGTTTCATGTCGGACTGGACAATGGAGTCGTTAAAC 10370 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 | ||| ||||| | ||||| || ||||| || || ||||| ||||| | ||| | || Sbjct 10371 TTTCTCCCAATGAGACGTTTAGCGTCAAAGATTGTGTTGGTGGGATTCATGGCAACCTGG 10430 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | ||||| ||||||||||| || ||||| || || || | ||||| ||||| Sbjct 10431 TTCTTGGCAGCATCTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTGGGAGTG 10490 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 || | || || || || || || || || || ||||| |||| || | ||||| ||| Sbjct 10491 GTTCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCGACA 10550 Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||| | | || || || | |||||| ||||||| Sbjct 10551 CAAGAATAGGTGGTGCCCAGATCAATGCCAATAG 10584 >seq5514 Length=41840 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || |||||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 38165 TTTTTGTCCAGACCATAAGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 38224 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 38225 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 38284 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | || |||| |||||| Sbjct 38285 GCAGGCACAGTCACTACAGCATTTGTTAC 38313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738911458760712