Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq12683 181 8e-40
seq5514 111 1e-18
>seq12683
Length=55699
Score = 181 bits (200), Expect = 8e-40
Identities = 937/1474 (64%), Gaps = 22/1474 (1%)
Strand=Plus/Plus
Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475
||| || |||| | |||||| ||||| || |||||||| | || || || || || |
Sbjct 9122 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCATCGATGTCGAAAGTTACCTCCAC 9181
Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535
|| || || |||| |||| || ||||| ||| | | ||| | ||||| ||
Sbjct 9182 CTGTGGTACACCTCGGGGAGCTGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTT 9241
Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595
|| || || || | || ||||||||| | | || || || | | || ||
Sbjct 9242 GTTGTCCTTGGTCATGGCTCTCTCACCCTCGTACACCTGAATCAGCACACCTGGCTGGTT 9301
Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAA 281654
||| || || || | || ||||| | | ||| || || || ||||| | | |
Sbjct 9302 ATCCGAGTATGTGGAGAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGTTTGA 9360
Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714
| | | ||||||| ||||| || || || | || ||||| || |||| || || |
Sbjct 9361 TTAGAGGCGTCATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 9420
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774
|| | | || ||| | || || ||| | ||| | || ||||| || || | ||
Sbjct 9421 GCAGCAGCAGATCTTGGACGTTCTCGGAAGTGTCACCCATGAGGATAGCAGCCTGGACAG 9480
Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834
||||||| || || || |||||||| || || | | | || || | | || || |
Sbjct 9481 CAGCACCGTAGGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCCCTGCCGTTAA 9540
Query 281835 AAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892
|||| | || || ||| | ||| | || ||||| | | || || ||||| | ||
Sbjct 9541 AAAAGTCCTGCAA-AAGCT-TCTGGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGAC 9598
Query 281893 AATTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951
|||||||| || ||| || |||||||| || | ||| | | || ||||| ||||
Sbjct 9599 TATTTCATGGACTCTG-GACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTT 9657
Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011
| || | || || | || || || ||||| || || || || || ||
Sbjct 9658 CCAGTGTTCCCCTGAAAAGCTCGGAGTTGAGCTCTTCAAAGCGTGCCCTTGT--GATGGA 9715
Query 282012 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069
| || || || || || || |||| ||| || | ||||| ||| || || |||
Sbjct 9716 GGTGTAGAAGTCGATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTAGA 9775
Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 282129
|| || | | || || | ||||| ||||| | || || | | ||| | || |
Sbjct 9776 GGACAGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGCCTCCTCACTGCTCT--CTTA 9833
Query 282130 TT--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAA 282185
|| | | | || | || | |||||| || || || || ||| | ||| | || |
Sbjct 9834 TTTTGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAA--ATGGTTGACCA 9891
Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245
|| || ||||| || || || || | | || | ||| | || ||| | || | |
Sbjct 9892 TCCGGTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCTCCCGCGGTGGCTTTCACCTCAA 9951
Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305
| | || || || | | || | | || ||| ||| || ||||| | |||||| |
Sbjct 9952 AGATACCGTCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCAAGATCAAAGA 10011
Query 282306 TAAGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364
| || ||||| | | | | | || ||| || || || || |||| || || ||
Sbjct 10012 TGAGCACATTGCGCTCCCCTCTTTTACCTTTG-TCCAGGCCGTAAGCAATGGCTGCTGCT 10070
Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424
|| || || || || || |||| |||||| || |||| || || || || || |||
Sbjct 10071 GTGGGCTCGTTGATGATCCTCAGAACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTG 10130
Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484
||||| || || || ||||| ||||| || ||||| || || || |||| || |||| |
Sbjct 10131 GCTTGCCTCTGGGAGTCGTTGAAATAAGCGGGAACTGTGATGACCGCATTTGACACTTTT 10190
Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544
| ||| | || || || | | ||||||||| || | ||| || || ||||
Sbjct 10191 TGTCCCAGGTAGGCCTCAGCGATCTCCTTCATTTTAACTAGGACCATGGAGGAGATTTCC 10250
Query 282545 TCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604
||||| || | ||| | || || || || | | | || || | |
Sbjct 10251 TCTGGGTAAAAGGCCTTAGTCTCCCCTTTGTACTCAACCTGGACTTTGGGCTTTCCATTA 10310
Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664
|| | || || || |||||||| |||||| || || || ||| | ||| |||||
Sbjct 10311 TCACTGATCACCTTGAATGGCCAGAGTTTCATGTCGGACTGGACAATGGAGTCGTTAAAC 10370
Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724
| ||| ||||| | ||||| || ||||| || || ||||| ||||| | ||| | ||
Sbjct 10371 TTTCTCCCAATGAGACGTTTAGCGTCAAAGATTGTGTTGGTGGGATTCATGGCAACCTGG 10430
Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784
| ||||| ||||||||||| || ||||| || || || | ||||| |||||
Sbjct 10431 TTCTTGGCAGCATCTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTGGGAGTG 10490
Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844
|| | || || || || || || || || || ||||| |||| || | ||||| |||
Sbjct 10491 GTTCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCGACA 10550
Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878
||| | | || || || | |||||| |||||||
Sbjct 10551 CAAGAATAGGTGGTGCCCAGATCAATGCCAATAG 10584
>seq5514
Length=41840
Score = 111 bits (122), Expect = 1e-18
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || |||||||| || | ||||||||||||||||||||| || || | | |||
Sbjct 38165 TTTTTGTCCAGACCATAAGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 38224
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||| ||| | ||||||||||| ||||| || | || || || || || ||
Sbjct 38225 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 38284
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480
||||| ||||| | || |||| ||||||
Sbjct 38285 GCAGGCACAGTCACTACAGCATTTGTTAC 38313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3738911458760712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |