Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq20292 93.3 8e-14 seq16167 84.2 4e-11 >seq20292 Length=13069 Score = 93.3 bits (102), Expect = 8e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 60141 TAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGT 60200 |||| |||| | |||||||| | | ||||| || || || || | ||||| |||| Sbjct 7188 TAGCAGGAGCTCTGTGGTGGTATTTCGTCTCTAAGGGCATCGAGTATCTGGATACAGTGT 7129 Query 60201 TTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTA 60260 ||||||| || |||||||| || || ||||||| ||| | ||||| || || || | | Sbjct 7128 TTTTCATCCTGAGGAAAAAATTCAACCAGGTTACTTTCCTGCACGTCTACCACCACTGCA 7069 Query 60261 CTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||||| || | | ||| | ||||| |||||| | || ||||| || Sbjct 7068 CCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 7020 >seq16167 Length=6939 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || || |||||||| || |||||||| || || || | || || || || Sbjct 139 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGCTCAACCTCA 80 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||||||||| || || |||||||| Sbjct 79 AGGGTGATGGTCTTCCCTGTCAACGTCTTCACGAAGATCTGCAT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981386760909068