Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq20292 95.1 2e-14 seq11093 84.2 4e-11 >seq20292 Length=13069 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 58371 TAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGT 58430 |||| |||| | |||||||| | | ||||| || || || || | |||||||||| Sbjct 7188 TAGCAGGAGCTCTGTGGTGGTATTTCGTCTCTAAGGGCATCGAGTATCTGGATACAGTGT 7129 Query 58431 TTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTA 58490 ||||||| || |||||||| || || || |||| || || ||||| || || || | | Sbjct 7128 TTTTCATCCTGAGGAAAAAATTCAACCAGGTTACTTTCCTGCACGTCTACCACCACTGCA 7069 Query 58491 CTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | ||||| || | | ||| | || || |||||| | |||||||| ||| Sbjct 7068 CCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 7019 >seq11093 Length=44841 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | || | | | || ||||| |||||||| || ||| Sbjct 9583 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACAGTCTTTTTCATCCTGAGG 9524 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || ||||| || || || ||||| || ||||| || ||||| | || ||||| | | Sbjct 9523 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGCACCATGTTCATCCTC 9464 Query 58505 GGATGGGTAGGTATTAAATGG 58525 | ||| | || || |||||| Sbjct 9463 TGGTGGATCGGCATCAAATGG 9443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903015822088320