Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq730 104 3e-17
seq18046 98.7 1e-15
seq5454 91.5 2e-13
seq18807 89.7 7e-13
seq18806 89.7 7e-13
seq8721 84.2 3e-11
>seq730
Length=28029
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 6225 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6166
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 6165 CCCGACGGGGAG 6154
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 6225 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6166
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 6165 CCCGACGGGGAG 6154
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411
||||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||
Sbjct 6153 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6212
Query 139412 ATACTAACGAGGA 139424
|||||||||||||
Sbjct 6213 ATACTAACGAGGA 6225
>seq18046
Length=8152
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 4238 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4179
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 4178 CCCGACGGGGAG 4167
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 4238 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4179
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4178 CCCGACGGGGAG 4167
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4167 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4226
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4227 TACTAACGAGGA 4238
>seq5454
Length=51032
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||
Sbjct 33637 TTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 33578
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 33577 CCCCGACGGGGAG 33565
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||
Sbjct 35437 TTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 35378
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 35377 CCCCGACGGGGAG 35365
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||
Sbjct 36225 TTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 36166
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 36165 CCCCGACGGGGAG 36153
Score = 86.0 bits (94), Expect = 8e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||||
Sbjct 33636 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 33577
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 33576 CCCGACGGGGAG 33565
Score = 86.0 bits (94), Expect = 8e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||||
Sbjct 35436 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 35377
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 35376 CCCGACGGGGAG 35365
Score = 86.0 bits (94), Expect = 8e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||||
Sbjct 36224 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 36165
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 36164 CCCGACGGGGAG 36153
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410
|||||| ||||||||| |||||||||||||| ||| | |||| ||| |||| | ||||
Sbjct 33563 AACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 33622
Query 139411 TATACTAACGAGGA 139424
||||||||||||||
Sbjct 33623 TATACTAACGAGGA 33636
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410
|||||| ||||||||| |||||||||||||| ||| | |||| ||| |||| | ||||
Sbjct 35363 AACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 35422
Query 139411 TATACTAACGAGGA 139424
||||||||||||||
Sbjct 35423 TATACTAACGAGGA 35436
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410
|||||| ||||||||| |||||||||||||| ||| | |||| ||| |||| | ||||
Sbjct 36151 AACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 36210
Query 139411 TATACTAACGAGGA 139424
||||||||||||||
Sbjct 36211 TATACTAACGAGGA 36224
>seq18807
Length=3261
Score = 89.7 bits (98), Expect = 7e-13
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|||||||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||
Sbjct 253 CCAGTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCG 194
Query 11785 ATTCCCCGACGAGGAGGGA 11803
|||||| |||| |||| ||
Sbjct 193 ATTCCCTGACGGGGAGAGA 175
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||||
Sbjct 249 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 190
Query 8718 CCCGACGAGGAG 8729
|| |||| ||||
Sbjct 189 CCTGACGGGGAG 178
>seq18806
Length=4747
Score = 89.7 bits (98), Expect = 7e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|||||||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||
Sbjct 1671 CCAGTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCG 1730
Query 11785 ATTCCCCGACGAGGAG 11800
|||||| |||| ||||
Sbjct 1731 ATTCCCTGACGGGGAG 1746
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||||
Sbjct 1675 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 1734
Query 8718 CCCGACGAGGAG 8729
|| |||| ||||
Sbjct 1735 CCTGACGGGGAG 1746
>seq8721
Length=66786
Score = 84.2 bits (92), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713
||| |||||||||||||||||| ||||| ||| ||||| | ||| ||||| |||||||
Sbjct 60371 TTAGTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACC-GGGTTCG 60429
Query 8714 ATTCCCCGACGAGGAG 8729
||||||||||| ||||
Sbjct 60430 ATTCCCCGACGGGGAG 60445
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||||||||||||||| ||||| ||| ||||| | ||| |||||||| ||||||
Sbjct 60373 AGTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGG-TTCGAT 60431
Query 11787 TCCCCGACGAGGAG 11800
||||||||| ||||
Sbjct 60432 TCCCCGACGGGGAG 60445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652559082473280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |