Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq15996 316 2e-81 seq25531 109 5e-19 >seq15996 Length=6831 Score = 316 bits (350), Expect = 2e-81 Identities = 1004/1539 (65%), Gaps = 32/1539 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | ||||||| | ||||||||| || | |||||| | || Sbjct 2446 TCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGG 2387 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| ||||| | Sbjct 2386 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 2327 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | || || || Sbjct 2326 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCT 2267 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| ||| ||||||| ||| ||| | || ||| | ||||||||||||||| Sbjct 2266 CCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 2209 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || ||||| ||| | || ||| ||||||| ||| || ||| || | || || Sbjct 2208 GAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 2149 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||||||| || ||||| ||||| |||| || Sbjct 2148 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAG 2089 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| ||||||| |||| |||| | | || ||||| || | || Sbjct 2088 CAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACC 2029 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 ||| ||||| | || || |||| ||| ||||||| | | |||| || || Sbjct 2028 CTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGA-CTTCTC-CGCT-TCAGGCAC 1972 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTC 148770 || |||| |||| ||||| |||||| ||||| || | || | || || || | Sbjct 1971 TGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTG-ACGATGACTTTGGTCA-CA 1914 Query 148771 TGCGC-AGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATA 148826 ||| || || ||| || | | ||| || | | ||| | ||||| Sbjct 1913 AACGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATG 1854 Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| ||||| ||||| || |||||| | | ||||||| || || || | ||| Sbjct 1853 GAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAG 1794 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 || ||||||| |||||| ||||| |||| || |||||||| |||||||| ||||| Sbjct 1793 AGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1734 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGG 149006 ||||||||||||||||| || |||||| ||| | || | ||| | || Sbjct 1733 TTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACC 1674 Query 149007 TCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGC 149066 | ||| || ||| ||| | | ||||||| ||| || || |||||| | Sbjct 1673 TGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTC 1614 Query 149067 TCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGAC 149126 |||||| |||| || |||| ||||| || |||||||||| || ||| ||||| || ||| Sbjct 1613 TCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGAC 1554 Query 149127 CACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATG 149186 || | || | ||| | |||||| ||||| ||||| | ||| | ||||| | Sbjct 1553 CAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA 1494 Query 149187 AGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246 ||||| | ||| | || || || |||| ||| | || | | || Sbjct 1493 AGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 1434 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTGCCG 149300 | ||| |||||| ||||| | ||||| || | ||| || |||| ||||| Sbjct 1433 ACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTG---TTGCCT 1377 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 ||||||||||||| ||| || ||||||| | |||| | ||| || | | || || Sbjct 1376 CCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTG 1317 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 | ||||||| || | ||| || || || ||| | | || ||| Sbjct 1316 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACG 1257 Query 149421 CCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCC 149480 ||||| || ||| | |||| |||||| || || | ||||| ||| ||||| Sbjct 1256 CCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCT 1197 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 |||||||||||| |||||||| ||||| ||||| | ||| || || || Sbjct 1196 TCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTT 1137 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 || || ||| | |||||| |||||| || || | |||| || || | |||| Sbjct 1136 CCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAC 1077 Query 149601 GACTCGA-GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 | ||| | | ||| | ||||| ||||| || | | || | ||| ||||| Sbjct 1076 GTCTCAATGGCTGCGCT-GATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGAGCAT 1018 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCTAGT 149717 |||||||| ||||||||||||||| || || | || |||| ||| || || Sbjct 1017 GTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGC 960 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 |||||| |||| ||| | |||||| || |||||| || Sbjct 959 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCGCGGTCG 921 >seq25531 Length=26544 Score = 109 bits (120), Expect = 5e-19 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 22109 TGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 22168 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| |||||||| ||||||||||| |||||||| || Sbjct 22169 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 22208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483209230886880