Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq11769 122 1e-22 >seq11769 Length=79708 Score = 122 bits (134), Expect = 1e-22 Identities = 358/537 (67%), Gaps = 25/537 (5%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || || ||| |||||| |||||| ||||| ||||||||| ||| | Sbjct 68518 GCCAGCTCCTTGGGCGAGGTGAAGTCGTCCACGTGGATGAAGGCGTCTCCCTGGATAAAG 68459 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGA 177064 || ||||| |||| || | | || || || | || || | || || | |||| Sbjct 68458 TTCTCGTAGTTCTGCCTGGGCGGGCCAAGAACCACTGGCACTGTCCC---CACAGAGAGT 68402 Query 177065 TCG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAG 177122 | ||| |||||||| ||||| |||||| |||| | |||||||||||| || || ||| Sbjct 68401 GGGTTGTACAGTTTTTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAAAGCCAGGTAG 68342 Query 177123 AATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTA 177180 || |||||| | ||| || |||| | |||| | || | || || || || | Sbjct 68341 AACTTACAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTACTCCCCGAAGG 68284 Query 177181 CGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCA 177240 | | || || | || | || |||||||| ||||| ||||||| || | || Sbjct 68283 CTTGTCCATACGCGTGAACCTCAATGTGTTTGTACAGCTCATTGTAGTATTTCACCCGCA 68224 Query 177241 CGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGG 177300 ||||||| | |||||| ||||| || | |||||| | | |||| | ||||| || || Sbjct 68223 CGTGGTCCTGGTTCCAGTTGCTCACAATCCAGCAGATCAGCTTG-TTTTTGCTGG-GTGG 68166 Query 177301 GATTCGATACTAAT-GCAGTGTCTCTGAGCGTTAGT-GATCCATAGGGCACGTGAATATC 177358 || | | || || | | || || | | || ||||| ||||| | ||| || Sbjct 68165 GACAAAGTCTTCATCGCCCT-CCGCT--GCTACAATGGACCCATAAGGCACTTCAATGTC 68109 Query 177359 CGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTG----TTTGA 177414 | || | | ||| | | || |||||||| | ||| || || || | | || Sbjct 68108 AGCATCCTGACGGTAATTGAGAGTCAGATTGAACATGTTCTCGATCCCAGGCAGCTGGGA 68049 Query 177415 AGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 || | ||| || || || || |||||||||||||||||||| || |||| ||||| Sbjct 68048 AGAG--TGTGAC--GGTGACTCCAAGTTCATCCATATCCACTTCTGGAAGGATGGTC 67996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578178849235200