Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 199 4e-46
>seq15996
Length=6831
Score = 199 bits (220), Expect = 4e-46
Identities = 931/1462 (64%), Gaps = 36/1462 (2%)
Strand=Plus/Minus
Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950
|||| || | |||||||| |||| ||||| | | | || | ||||| ||| | |
Sbjct 2425 GATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 2366
Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010
|| | ||||| || ||||| | || ||||| |||| || || ||||| ||||
Sbjct 2365 CTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 2306
Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070
|| || || | || |||| | ||| || ||||||| | | |||||||
Sbjct 2305 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCA 2246
Query 147071 ACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128
|| ||| | ||||||| | |||||||||||||||||| | || ||| | ||
Sbjct 2245 GCAGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGG 2188
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGA 147187
| ||| || |||| |||| ||| || | ||| ||| || ||||| ||||| |
Sbjct 2187 AGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGCCTCCA 2129
Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCT 147247
| || | ||||| ||||| || |||||| |||| || | || || ||| |
Sbjct 2128 GGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTT 2069
Query 147248 CGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307
|| | || |||| || | ||||| || ||||||||||| | |||| ||||| |
Sbjct 2068 CGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCG 2009
Query 147308 GTCGATGCTTTTCGTTG-----CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATC 147362
| | || | |||| || |||||| || | |||| |||| |||| ||
Sbjct 2008 GCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAGTAGTTGATTTC 1954
Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422
||||||||||| | ||| || | ||||| || | ||||| | || ||
Sbjct 1953 GATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTC 1894
Query 147423 ATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481
| |||||| || | |||||| || ||| | ||||| || |||||||| || |
Sbjct 1893 AAAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGCGCGATGGAGGCCAGATTACACA 1838
Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541
| || ||| ||| || | |||||| || ||||| | ||| |||||||||| ||| |
Sbjct 1837 CCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGA 1778
Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601
|| |||| ||| ||||| ||||| |||| ||||| ||||||||| | ||||||||||
Sbjct 1777 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1718
Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG---CAGGTCCTGCGCTCGCA 147658
| ||||| || || | | |||||| || || | ||| || ||
Sbjct 1717 GCGTACCGGTTTCCGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCA 1661
Query 147659 CC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717
|| ||| || | ||||| || || ||| ||||| | ||| ||||| ||
Sbjct 1660 CCACGC-GCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCC 1602
Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777
|| |||| ||| | || ||||| |||| | |||||||||||| ||||| | ||
Sbjct 1601 CCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTG 1542
Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCG 147835
| || | ||| ||||| || || | ||||| ||||| | ||| || | ||
Sbjct 1541 CTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCC 1482
Query 147836 CTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGT 147895
|| ||| ||||| || |||| |||| | || | | | | | |||| ||
Sbjct 1481 CTCTGC--TCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGT 1424
Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952
||||||| || | ||| | ||| | ||| || | | || || ||||||||||| |
Sbjct 1423 GCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGT 1364
Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012
||| || ||||||| | || | || |||||| | || ||| | | |||||||||
Sbjct 1363 AACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGG 1304
Query 148013 TGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGC 148072
|| ||| | ||| || | ||| | | || ||||| || || |||
Sbjct 1303 TGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGG 1244
Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132
| |||| || ||| || || | || || ||| ||||| |||||||||||||
Sbjct 1243 CCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGT 1184
Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAA 148192
|| | | | |||| || || ||| || || | |||||||| ||| |
Sbjct 1183 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGA 1124
Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252
| ||||| ||||| || ||| | || | || || | ||||||||||| ||
Sbjct 1123 GCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTG 1064
Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312
| |||||| ||| || || | | || | ||||||||||||||| || || |
Sbjct 1063 CGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCT 1004
Query 148313 CGGCAACTTGATTGTTGATCTT 148334
| || |||| |||||||||
Sbjct 1003 CCGCCACTTTGCCGTTGATCTT 982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476402611108320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |