Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15996 199 4e-46 >seq15996 Length=6831 Score = 199 bits (220), Expect = 4e-46 Identities = 931/1462 (64%), Gaps = 36/1462 (2%) Strand=Plus/Minus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 |||| || | |||||||| |||| ||||| | | | || | ||||| ||| | | Sbjct 2425 GATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 2366 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 || | ||||| || ||||| | || ||||| |||| || || ||||| |||| Sbjct 2365 CTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 2306 Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 || || || | || |||| | ||| || ||||||| | | ||||||| Sbjct 2305 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCA 2246 Query 147071 ACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128 || ||| | ||||||| | |||||||||||||||||| | || ||| | || Sbjct 2245 GCAGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGG 2188 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGA 147187 | ||| || |||| |||| ||| || | ||| ||| || ||||| ||||| | Sbjct 2187 AGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGCCTCCA 2129 Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCT 147247 | || | ||||| ||||| || |||||| |||| || | || || ||| | Sbjct 2128 GGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTT 2069 Query 147248 CGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 || | || |||| || | ||||| || ||||||||||| | |||| ||||| | Sbjct 2068 CGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCG 2009 Query 147308 GTCGATGCTTTTCGTTG-----CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATC 147362 | | || | |||| || |||||| || | |||| |||| |||| || Sbjct 2008 GCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAGTAGTTGATTTC 1954 Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 ||||||||||| | ||| || | ||||| || | ||||| | || || Sbjct 1953 GATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTC 1894 Query 147423 ATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 | |||||| || | |||||| || ||| | ||||| || |||||||| || | Sbjct 1893 AAAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGCGCGATGGAGGCCAGATTACACA 1838 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 | || ||| ||| || | |||||| || ||||| | ||| |||||||||| ||| | Sbjct 1837 CCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGA 1778 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||| ||| ||||| ||||| |||| ||||| ||||||||| | |||||||||| Sbjct 1777 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1718 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG---CAGGTCCTGCGCTCGCA 147658 | ||||| || || | | |||||| || || | ||| || || Sbjct 1717 GCGTACCGGTTTCCGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCA 1661 Query 147659 CC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 || ||| || | ||||| || || ||| ||||| | ||| ||||| || Sbjct 1660 CCACGC-GCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCC 1602 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 || |||| ||| | || ||||| |||| | |||||||||||| ||||| | || Sbjct 1601 CCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTG 1542 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCG 147835 | || | ||| ||||| || || | ||||| ||||| | ||| || | || Sbjct 1541 CTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCC 1482 Query 147836 CTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGT 147895 || ||| ||||| || |||| |||| | || | | | | | |||| || Sbjct 1481 CTCTGC--TCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGT 1424 Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952 ||||||| || | ||| | ||| | ||| || | | || || ||||||||||| | Sbjct 1423 GCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGT 1364 Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012 ||| || ||||||| | || | || |||||| | || ||| | | ||||||||| Sbjct 1363 AACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGG 1304 Query 148013 TGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGC 148072 || ||| | ||| || | ||| | | || ||||| || || ||| Sbjct 1303 TGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGG 1244 Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 | |||| || ||| || || | || || ||| ||||| ||||||||||||| Sbjct 1243 CCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGT 1184 Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAA 148192 || | | | |||| || || ||| || || | |||||||| ||| | Sbjct 1183 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGA 1124 Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252 | ||||| ||||| || ||| | || | || || | ||||||||||| || Sbjct 1123 GCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTG 1064 Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312 | |||||| ||| || || | | || | ||||||||||||||| || || | Sbjct 1063 CGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCT 1004 Query 148313 CGGCAACTTGATTGTTGATCTT 148334 | || |||| ||||||||| Sbjct 1003 CCGCCACTTTGCCGTTGATCTT 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476402611108320