Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1133 100 9e-18 seq26698 98.7 3e-17 seq30558 95.1 4e-16 seq3415 89.7 2e-14 seq17555 86.0 2e-13 seq19839 78.8 3e-11 >seq1133 Length=53824 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 6360 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 6301 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 6300 CCCGGGTTTCGGC 6288 >seq26698 Length=2561 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2480 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2539 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2540 CCGGGTTTCGGC 2551 >seq30558 Length=9465 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||| |||||||||||||||||||| ||||||||||| | | Sbjct 3991 GCCGAAATAGCTCAGTTGGGAGAACATTAGACTGAAGATCTAAAAGTCCCTGGTTCGAAC 3932 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 3931 CTGGGTTTCAGC 3920 >seq3415 Length=84356 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| ||||||||||| || | | Sbjct 53816 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGATCGATC 53875 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53876 CCGGGTTTCGGC 53887 >seq17555 Length=19539 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||| || | |||||| | Sbjct 7916 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGCTTTGATCCCGGGTT 7975 Query 2836 TCAGC 2840 || || Sbjct 7976 TCGGC 7980 >seq19839 Length=14378 Score = 78.8 bits (86), Expect = 3e-11 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 2761 TGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 ||||| || || ||| | || |||||||||||| ||||||||||||||||||||||||| Sbjct 143 TGTTTGTGTGCCGAAATGGCGGAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 84 Query 2820 GGTTC 2824 ||||| Sbjct 83 GGTTC 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15843530494740