Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1133 100 9e-18
seq26698 98.7 3e-17
seq30558 95.1 4e-16
seq3415 89.7 2e-14
seq17555 86.0 2e-13
seq19839 78.8 3e-11
>seq1133
Length=53824
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 6360 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 6301
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 6300 CCCGGGTTTCGGC 6288
>seq26698
Length=2561
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2480 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2539
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2540 CCGGGTTTCGGC 2551
>seq30558
Length=9465
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||| | |
Sbjct 3991 GCCGAAATAGCTCAGTTGGGAGAACATTAGACTGAAGATCTAAAAGTCCCTGGTTCGAAC 3932
Query 2829 CCGGGCTTCAGC 2840
| ||| ||||||
Sbjct 3931 CTGGGTTTCAGC 3920
>seq3415
Length=84356
Score = 89.7 bits (98), Expect = 2e-14
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||||||||||| ||||||||||| || | |
Sbjct 53816 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGATCGATC 53875
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 53876 CCGGGTTTCGGC 53887
>seq17555
Length=19539
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835
|||||||||||||||||| |||||||||||||||||||||||||| || | |||||| |
Sbjct 7916 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGCTTTGATCCCGGGTT 7975
Query 2836 TCAGC 2840
|| ||
Sbjct 7976 TCGGC 7980
>seq19839
Length=14378
Score = 78.8 bits (86), Expect = 3e-11
Identities = 57/65 (88%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 2761 TGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819
||||| || || ||| | || |||||||||||| |||||||||||||||||||||||||
Sbjct 143 TGTTTGTGTGCCGAAATGGCGGAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 84
Query 2820 GGTTC 2824
|||||
Sbjct 83 GGTTC 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15843530494740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |