Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq27843 149 7e-31 >seq27843 Length=4971 Score = 149 bits (164), Expect = 7e-31 Identities = 141/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | ||| || | ||||||||| || || | |||||||| || ||||| Sbjct 1799 CTTGAGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAA 1858 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||| |||||||| || ||||| | |||||||||||| ||||| ||||| ||||| Sbjct 1859 AGGCACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTC 1918 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 |||||| ||||| |||||| |||||| || ||||| |||||| ||||| ||| || Sbjct 1919 ACACACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCTGC 1978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT 147335 |||| ||| |||||||||||||||||||| || ||||| || ||||||||||| || Sbjct 2961 GTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTCGCCTTCCTC 3020 Query 147336 TCTGTGCGAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || | | ||| |||| | ||| || || || ||||||||| ||| |||||||| Sbjct 3021 TCGATCTGTGAA-CCCG--AGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATCCCAGAT 3077 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTT 147419 ||| || || || |||||||| || Sbjct 3078 CTTCACCCCTTTCGCCGAGAGCTCTTT 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232636476800