Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 152 7e-31
seq17668 116 5e-20
seq22580 111 2e-18
seq7876 111 2e-18
seq6324 105 1e-16
seq25531 95.1 2e-13
seq30050 86.0 9e-11
>seq15996
Length=6831
Score = 152 bits (168), Expect = 7e-31
Identities = 206/287 (72%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955
||||| || ||| ||||||| || | ||||||||||| || || || || | |
Sbjct 1088 TGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCGGGAACCAACAGGC 1147
Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015
| ||| || ||||| ||| | | |||||||| ||| ||||| ||||| || |
Sbjct 1148 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTACG 1207
Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075
||||||| |||||||| || |||||||||||| ||||||| || ||||| | || |
Sbjct 1208 ACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCA 1267
Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135
| | || | |||| |||| | || |||||||||||| | |||||||| || |
Sbjct 1268 GCTGCATCCGATCGACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCG 1327
Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| |||||||| | || | ||| |||||||||| ||||||||||||
Sbjct 1328 TCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGTCGACCAG 1374
Score = 102 bits (112), Expect = 1e-15
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972
|||| ||| || | ||| |||| |||| | |||||||||||| | || | ||||
Sbjct 2279 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGA 2338
Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032
|||||||||||| |||| | |||| | | ||| |||||||||||||| ||| | ||||
Sbjct 2339 TCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGC 2398
Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092
||||||| || ||| | || || | |||||| |||| | || || | | || |
Sbjct 2399 TCTCGGGAGAGTTTCAGATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGGGGAC 2458
Query 263093 TGTGGA 263098
||||||
Sbjct 2459 TGTGGA 2464
Score = 89.7 bits (98), Expect = 7e-12
Identities = 97/126 (77%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162
|||||| ||| | |||| | || ||||| ||||| |||||| | ||||| |||||| |
Sbjct 1684 GCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGC 1743
Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGA 262221
||| || |||||||||||||| |||||||||| | | || | |||||| ||||| ||
Sbjct 1744 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAG-CAACCTCTGCACAGA 1802
Query 262222 GATCGT 262227
|| ||
Sbjct 1803 AATAGT 1808
>seq17668
Length=3218
Score = 116 bits (128), Expect = 5e-20
Identities = 165/228 (72%), Gaps = 13/228 (6%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| ||||| |||| ||| ||| |||| | |||
Sbjct 1720 TACAAGGTGCTGAAGCAGGTCCACCCTGATACCGG-----CATT-TCCTCCAAGGCTATG 1667
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| ||||| | |||||| | || ||||||| | || || |||
Sbjct 1666 GGCATCATGAACTCCTTTGTGAGCGACATCTTTGAGCGCATCGCCGCCT---CCCGTC-- 1612
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG-ATCCAGACCGCCGTGCG 725092
|||| | || |||||||||| ||| ||| | | | ||| |||||||||||||| ||
Sbjct 1611 -TGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGGATCCAGACCGCCGTCCG 1553
Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|||| | ||| ||| || ||||||| |||||| || || ||||| ||
Sbjct 1552 CCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTGTCTGAGGGAAC 1505
>seq22580
Length=18100
Score = 111 bits (122), Expect = 2e-18
Identities = 132/178 (74%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||| | |||||||| |||||| |||| |||| ||| |||| |||
Sbjct 17928 TCTACAAGGTGATGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 17981
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| || |||| | |||||| |
Sbjct 17982 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGTATCGCCGGGGAGGCCTCCC 18041
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089
| ||||| | || |||||||||| ||| ||| | | | |||||||||||||| ||
Sbjct 18042 GTCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGT 18099
>seq7876
Length=24251
Score = 111 bits (122), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 11/211 (5%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
|||||||| || |||||||| |||||| |||| || |||||||| | |||||
Sbjct 18347 TACAAGGTCCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 18400
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| ||||| | |||||| | || ||||||| | ||| || ||
Sbjct 18401 GGCATCATGAACTCCTTTGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGTCCTCCCGT 18460
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| |||
Sbjct 18461 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 18520
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACG 725124
||| | || | || ||||| | |||||
Sbjct 18521 CTGCT-----GCTGTGAGCTGGCTAAGCACG 18546
>seq6324
Length=36621
Score = 105 bits (116), Expect = 1e-16
Identities = 161/232 (69%), Gaps = 9/232 (4%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
|| |||||||| || ||||||||||| || || ||| |||||||| | |||||
Sbjct 540 TATAAGGTGCTGAAACAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 593
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||||||||||||||| |||| ||||||| | || || |||
Sbjct 594 GGCATCATGAACTCGTTTGTCAACGACATTTTCGAGCGCATCGCCGGGGAAGCGTCGCGC 653
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGA---CCGCCGTG 725090
||||||| || ||||||| | ||| ||| | | | ||||||||||
Sbjct 654 CTGGCGCACTACAACAAGAGATCCACCATCACCTCCAGGGAGATCCAGANNNNNNNNNNN 713
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 714 NNNNNNNNNNNGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 765
>seq25531
Length=26544
Score = 95.1 bits (104), Expect = 2e-13
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| | |||| ||||| | | | | || | |||||||| ||||| |||||| |||||
Sbjct 22253 CAGCTGTGGTACGCCATCATTGAGTCTCAGACAGAGACCGGTACGCCTTACATGCTCTAC 22194
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210
||||||||| |||| || |||||||||||||| |||||||||| | | |||
Sbjct 22193 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 22134
Query 262211 CTGTGCACCGAGATCGT 262227
|||||||| ||||| ||
Sbjct 22133 CTGTGCACGGAGATTGT 22117
Score = 87.8 bits (96), Expect = 3e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
||||| |||| | ||||||||| || | || | |||||||||||||||| ||| |
Sbjct 21220 TGCTCTTGGCCCCCATGCCCACAGCTTCAACTGCCCAGATCCTGGGCAACAATGAGTCCA 21161
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046
| ||| | ||| |||||||||||||| ||| | ||||||||||| || |||
Sbjct 21160 TTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 21108
>seq30050
Length=2981
Score = 86.0 bits (94), Expect = 9e-11
Identities = 88/114 (77%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||| || ||||| |||||| ||| | ||||||||| |||||
Sbjct 676 GAGCCGCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCAAGTACCACGAC 735
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | |||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 736 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCAGAGGAGGT 788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7174434228247944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |