Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq15996 152 7e-31 seq17668 116 5e-20 seq22580 111 2e-18 seq7876 111 2e-18 seq6324 105 1e-16 seq25531 95.1 2e-13 seq30050 86.0 9e-11 >seq15996 Length=6831 Score = 152 bits (168), Expect = 7e-31 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || | ||||||||||| || || || || | | Sbjct 1088 TGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCGGGAACCAACAGGC 1147 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||||| ||| ||||| ||||| || | Sbjct 1148 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTACG 1207 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| |||||||| || |||||||||||| ||||||| || ||||| | || | Sbjct 1208 ACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCA 1267 Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135 | | || | |||| |||| | || |||||||||||| | |||||||| || | Sbjct 1268 GCTGCATCCGATCGACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCG 1327 Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | |||||||| | || | ||| |||||||||| |||||||||||| Sbjct 1328 TCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGTCGACCAG 1374 Score = 102 bits (112), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| || | ||| |||| |||| | |||||||||||| | || | |||| Sbjct 2279 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGA 2338 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||||||||||| |||| | |||| | | ||| |||||||||||||| ||| | |||| Sbjct 2339 TCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGC 2398 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 ||||||| || ||| | || || | |||||| |||| | || || | | || | Sbjct 2399 TCTCGGGAGAGTTTCAGATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGGGGAC 2458 Query 263093 TGTGGA 263098 |||||| Sbjct 2459 TGTGGA 2464 Score = 89.7 bits (98), Expect = 7e-12 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162 |||||| ||| | |||| | || ||||| ||||| |||||| | ||||| |||||| | Sbjct 1684 GCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGC 1743 Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGA 262221 ||| || |||||||||||||| |||||||||| | | || | |||||| ||||| || Sbjct 1744 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAG-CAACCTCTGCACAGA 1802 Query 262222 GATCGT 262227 || || Sbjct 1803 AATAGT 1808 >seq17668 Length=3218 Score = 116 bits (128), Expect = 5e-20 Identities = 165/228 (72%), Gaps = 13/228 (6%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| ||| ||| |||| | ||| Sbjct 1720 TACAAGGTGCTGAAGCAGGTCCACCCTGATACCGG-----CATT-TCCTCCAAGGCTATG 1667 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| | |||||| | || ||||||| | || || ||| Sbjct 1666 GGCATCATGAACTCCTTTGTGAGCGACATCTTTGAGCGCATCGCCGCCT---CCCGTC-- 1612 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG-ATCCAGACCGCCGTGCG 725092 |||| | || |||||||||| ||| ||| | | | ||| |||||||||||||| || Sbjct 1611 -TGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGGATCCAGACCGCCGTCCG 1553 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| | ||| ||| || ||||||| |||||| || || ||||| || Sbjct 1552 CCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTGTCTGAGGGAAC 1505 >seq22580 Length=18100 Score = 111 bits (122), Expect = 2e-18 Identities = 132/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||| | |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 17928 TCTACAAGGTGATGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 17981 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| || |||| | |||||| | Sbjct 17982 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGTATCGCCGGGGAGGCCTCCC 18041 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | ||||| | || |||||||||| ||| ||| | | | |||||||||||||| || Sbjct 18042 GTCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGT 18099 >seq7876 Length=24251 Score = 111 bits (122), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 11/211 (5%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||| |||||| |||| || |||||||| | ||||| Sbjct 18347 TACAAGGTCCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 18400 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| | |||||| | || ||||||| | ||| || || Sbjct 18401 GGCATCATGAACTCCTTTGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGTCCTCCCGT 18460 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 18461 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 18520 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACG 725124 ||| | || | || ||||| | ||||| Sbjct 18521 CTGCT-----GCTGTGAGCTGGCTAAGCACG 18546 >seq6324 Length=36621 Score = 105 bits (116), Expect = 1e-16 Identities = 161/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||||| || ||||||||||| || || ||| |||||||| | ||||| Sbjct 540 TATAAGGTGCTGAAACAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 593 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| | || || ||| Sbjct 594 GGCATCATGAACTCGTTTGTCAACGACATTTTCGAGCGCATCGCCGGGGAAGCGTCGCGC 653 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGA---CCGCCGTG 725090 ||||||| || ||||||| | ||| ||| | | | |||||||||| Sbjct 654 CTGGCGCACTACAACAAGAGATCCACCATCACCTCCAGGGAGATCCAGANNNNNNNNNNN 713 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||||||| ||||||||| ||||||||||||| Sbjct 714 NNNNNNNNNNNGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 765 >seq25531 Length=26544 Score = 95.1 bits (104), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| | | | | || | |||||||| ||||| |||||| ||||| Sbjct 22253 CAGCTGTGGTACGCCATCATTGAGTCTCAGACAGAGACCGGTACGCCTTACATGCTCTAC 22194 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| |||||||||| | | ||| Sbjct 22193 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 22134 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| ||||| || Sbjct 22133 CTGTGCACGGAGATTGT 22117 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| ||| | Sbjct 21220 TGCTCTTGGCCCCCATGCCCACAGCTTCAACTGCCCAGATCCTGGGCAACAATGAGTCCA 21161 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | ||| | ||| |||||||||||||| ||| | ||||||||||| || ||| Sbjct 21160 TTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 21108 >seq30050 Length=2981 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || ||||| |||||| ||| | ||||||||| ||||| Sbjct 676 GAGCCGCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCAAGTACCACGAC 735 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||| || || |||||||| |||||||| Sbjct 736 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCAGAGGAGGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174434228247944