Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq15996 150 2e-31 seq471 116 4e-21 seq25531 93.3 4e-14 >seq15996 Length=6831 Score = 150 bits (166), Expect = 2e-31 Identities = 901/1430 (63%), Gaps = 32/1430 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||||||| || ||||| || || |||||||| || | || Sbjct 972 CTACCTGTTGAAGATCAACGGCAAAGTGGCGGAGCGTCCGCAGCACATGCTCATGAGAGT 1031 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | || || || ||| ||||| ||| ||| | || |||||| | || |||| Sbjct 1032 ATCTGTCGGGATCCACAAAACGGACATCAGCGCAGCCATTGAGACGTACAACCTGCTGTC 1091 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || ||||| | || |||||| || ||| ||| || Sbjct 1092 GGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCGGGAACCAACAGGCCACA 1151 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||||||| |||| Sbjct 1152 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTACGACAC 1211 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| | || ||| || ||||| | | ||| ||||| || || || | | Sbjct 1212 GCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTG 1271 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||||| ||||||||| || ||| ||| | | || Sbjct 1272 CATCCGATCGACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCC 1331 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAA-AG 7942 |||| || | || | ||| ||| ||| ||| | || |||||||| || || ||| || Sbjct 1332 CATGCTGAGAGTCTACAACAACACGGCGCGTTACGTCGACCAGGGAGGCAA---CAAGAG 1388 Query 7943 GC-----GCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAA 7997 || || |||||| || ||||||| |||||| ||| | | | | || | Sbjct 1389 GCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTTCGACGTGTTTGACTTCCTGGA 1448 Query 7998 TCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGC--GCGATCTATTCTTCGGATTG 8055 ||| |||| || || | |||| || || | || || |||| || || Sbjct 1449 GCTGAAGAAGAACACCGGAAAGGAGG--AGCAGAGGGCCAGAGACCTTTTCTACGCCATG 1506 Query 8056 TGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGC 8115 ||| | ||||| ||||| |||| | | || | | || | | ||||| || ||||| Sbjct 1507 TGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACCAAGACTGGTCTCTGATGTG- 1565 Query 8116 CCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAA 8174 |||| || ||||| | | | | || | || || | |||||| Sbjct 1566 TCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTCGAGAAGCTGTACAC 1625 Query 8175 ACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGC 8234 || || | || || | | ||| ||||| || | | || | ||| Sbjct 1626 CACGTATGAGAAGGAGGGGAGGGTCAAGCGCGTGGTGAAGGCTCAGCAGGTGTGGCACGC 1685 Query 8235 CATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAA 8294 ||||||||| | || | |||||||||| |||||||||||||||||||||||| ||||| Sbjct 1686 CATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAA 1745 Query 8295 CGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAAT 8354 | || ||||| || || |||||||||| ||||||| || ||| | ||||| Sbjct 1746 CAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAAT 1805 Query 8355 TGTACAGTACAGC-GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413 || |||||| | ||| ||| || || || || || ||||| || || | | | Sbjct 1806 AGTTGAGTACACCAGCG-ACGATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTCA 1864 Query 8414 ACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACG-CCGT 8471 || || || || | || | |||| |||||| || || | | || || Sbjct 1865 ACATGTACG----TCACCCCTGAGCGGACTTTTGACTTTAAAAAACT----AGCGTTTGT 1916 Query 8472 G---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGA 8528 | |||| | || || || | || || || |||| | || || || Sbjct 1917 GACCAAAGTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCC 1976 Query 8529 AGAAGCGCGCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGG 8587 |||||| | | | || |||| ||||||||| || | || | |||||||| ||| ||| Sbjct 1977 TGAAGCG-GAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGG 2035 Query 8588 CCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACA 8647 | ||||| || | | ||||| ||| | |||||||| || || | |||| |||| Sbjct 2036 CAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACA 2095 Query 8648 TAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAG 8707 | |||| || || | || |||| ||| | || || ||||| | || ||| | Sbjct 2096 TTCAAATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTG 2155 Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | | ||| | ||||| |||||| ||| || | |||| || || | || |||| Sbjct 2156 AGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACG 2215 Query 8768 ACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTG 8827 |||||||| | ||||||||| || | | |||| | |||| || || | Sbjct 2216 ACATGTGGGAGAAGACGCCCACCGACCTGCTGGACTGGAAGGCCCTGAAGGAGAAGATCG 2275 Query 8828 CTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTC 8887 | | ||| || | || ||| || |||| |||||||| ||| | || || | Sbjct 2276 CCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCC 2335 Query 8888 AAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || |||| |||||||| ||| | || | | ||||| |||| | ||| Sbjct 2336 AGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 2385 >seq471 Length=23154 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| || || || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 16871 TTTCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 16812 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | ||| || ||||||||||| || || |||| | |||||| || || Sbjct 16811 GAGAGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGG 16752 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || || || || |||||| || | |||||| | ||| Sbjct 16751 GGGATTCCCTCCTTATCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCC 16692 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || ||||| |||||||| | || || || || || ||||| ||| Sbjct 16691 ACCTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATCTTG 16638 >seq25531 Length=26544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| || || | ||| | || ||||||| ||| |||||||| ||||| ||||| || Sbjct 22242 CGCCATCATTGAGTCTCAGACAGAGACCGGTACGCCTTACATGCTCTACAAGGACGCCTG 22183 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 22182 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 22123 Query 8352 AATTGTACAGTACA 8365 |||||| |||||| Sbjct 22122 GATTGTAGAGTACA 22109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505177212390240