Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15996 394 1e-104 seq95 105 9e-18 seq25531 93.3 6e-14 >seq15996 Length=6831 Score = 394 bits (436), Expect = 1e-104 Identities = 1255/1939 (65%), Gaps = 13/1939 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| | |||||||| | || | || || || ||||| Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 ||||| ||||| || || || | ||| || || ||||| || || ||||| || | ||| Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 2240 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCT 2181 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | || || || || || ||||| | || || Sbjct 2180 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 2121 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || || | | || || || || || | || ||||| || Sbjct 2120 TAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 2061 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 || | | || || || || |||||||| ||||| || || || ||||| || || || Sbjct 2060 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGG 2001 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | || || || || || || ||||| || || Sbjct 2000 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTC 1941 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 | ||| ||| | ||||| ||| | |||||| ||| ||||| || || Sbjct 1940 AAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGCTCA 1881 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | || || |||||||| || |||||||||| Sbjct 1880 GGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCG 1821 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | || | | ||| ||||| || || || || | |||||| || |||||||| ||| Sbjct 1820 CTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGC 1761 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| |||||||| ||||| || || |||| ||||| ||||| || Sbjct 1760 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTC 1701 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || |||||||| | | ||| || | ||| || | ||| |||| | | | Sbjct 1700 TGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCC 1641 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || ||||| || || ||| ||||| || || ||||| || |||| || Sbjct 1640 TCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCG 1581 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || || || || |||||||||| ||||| | | | || |||| ||||| || Sbjct 1580 GGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAAC 1521 Query 69610 AGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 || ||||| ||||| | || || ||| || ||||||| || | || || ||||| || Sbjct 1520 AGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGT 1462 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || || || || | | || | ||||| || || || || || || Sbjct 1461 GTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGC 1402 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | |||| || | || || |||||||| || | ||| | || ||||| || ||||| Sbjct 1401 AAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGAC 1342 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 ||||||||| || | | || || || || || || || || | || || || || | Sbjct 1341 TCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGT 1282 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 | || || || | | | || ||||| || ||| || ||||| || ||||| Sbjct 1281 CGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACA 1222 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | |||| ||||| || || || || ||||| || || ||||| || || || || Sbjct 1221 CTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 1162 Query 69969 GCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 ||| |||| || | ||| | |||||||| || || | || || || ||||| |||| Sbjct 1161 GCTGGACAGCTGTGGCCTGT-TGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGA 1103 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 |||| || || || ||||| ||||| || ||||| |||| || ||| | || | Sbjct 1102 ACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGTGGA 1043 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 | || | | || | ||| | ||| ||||| || || || || ||| || || | Sbjct 1042 TCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCT 983 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 |||||||||| || ||||| || || || || || ||||||| || || || | | Sbjct 982 TCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCGCGGT 923 Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAACAG 70264 || | || || | || || || || || | | | ||| || || | | | Sbjct 922 CGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGTCTCCT 863 Query 70265 TAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTT 70324 | ||||| || ||||| | | ||| || || | |||||| | | || | Sbjct 862 T---GGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGTCCT 806 Query 70325 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGG 70384 |||| || ||||| || | || || || || ||||| | ||||| | ||| || | | Sbjct 805 CCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGTG 746 Query 70385 CTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTA 70444 | || || || || ||||| || |||| || || || || || || || || || | Sbjct 745 CAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGCCA 686 Query 70445 ACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTA 70504 ||| || | || | ||||| || ||| | || | || || || || ||||| | | Sbjct 685 GCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTAA 626 Query 70505 TTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGATG 70564 | | | | ||||| | || || | |||||| || || || | || || ||||| | Sbjct 625 TCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGACG 566 Query 70565 TAATTTTATCAAACATAAC 70583 | |||||||| ||||| || Sbjct 565 TGATTTTATCGAACATGAC 547 >seq95 Length=91801 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 11834 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 11893 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||| | |||||||| || || || || ||||| || || || ||||||||||| | Sbjct 11894 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAATATTCCCTCCACTGCTGCAAAAG 11953 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 11954 CCACAATTCGCTCCCC 11969 >seq25531 Length=26544 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 22120 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 22179 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || ||||| || || ||||||| || || || Sbjct 22180 TTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGAGACTCAATGAT 22238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686608174363680