Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5904 109 4e-19 seq12558 95.1 1e-14 >seq5904 Length=17799 Score = 109 bits (120), Expect = 4e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||||||| || || ||| |||| || || || || ||| |||| | |||||| Sbjct 6379 CCTGCTCCCAGTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGGCTGTTAGTCCAGCA 6320 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || | | ||| |||| ||||||||||||||||||||||| Sbjct 6319 AACACAGCACAGGTCAGGAACAAGGCTTGCAGTACGGTGGAGTATTCATAGAAGGTCA 6262 >seq12558 Length=70129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| || ||| ||||||||||||||| |||| |||||| || |||||||| | Sbjct 15218 CACCGTTGATCGTAAACTTGCTGTCTGTGTAGAGAACCAACTTCTTTATGTTGTTCTCTT 15277 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| |||| |||||| Sbjct 15278 TGGCTTGTTCCAGCGCTTTGCATGCTGCCTGG 15309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| ||||||| ||| ||| |||| ||||| |||||||||||| || ||||| | Sbjct 14926 CCAGACCACCTCCACCTCTGCATTCAGTTTGTCCAACTTCATAAAGTCGTCTTTGTTGGT 14985 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| ||||| | |||||||||||| ||| ||||||| || ||||| | | Sbjct 14986 GATCTGA-CCTCCAGATTTCAGCCTCCAGCCATTCAGCTTCCATGCGTTCACCCAGCTGG 15044 Query 77430 TCACACC 77436 ||||||| Sbjct 15045 TCACACC 15051 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||| | |||||||||||||||| ||||| ||||||||||| | |||| || Sbjct 16921 CTCCTCTAATGAACGCCCAGGCATCTTTCTCTGAGGCAAACTTCTTGTAAGAAGCTGATG 16980 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | ||||||| || ||||||||||||||||||| Sbjct 16981 GAAATTTGTTCACCTGGCTCTTACATTCATCCC 17013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397286402047060