Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 165 1e-35
seq25531 95.1 1e-14
>seq15996
Length=6831
Score = 165 bits (182), Expect = 1e-35
Identities = 826/1305 (63%), Gaps = 42/1305 (3%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 2384 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2325
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| |||||||| || |||| || |||||||| | | || | | || |||
Sbjct 2324 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 2265
Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355
|| || || | |||||| || | || || | |||||| |||| || ||
Sbjct 2264 TTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 2211
Query 118356 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 118412
|||||||| || | | | || || || || | ||||| || ||||| |||| |
Sbjct 2210 TGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 2151
Query 118413 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA 118472
|||| ||| |||||||||| ||||| |||| || || || ||||| || ||
Sbjct 2150 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094
Query 118473 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 118532
|||| || |||||| | || |||| | || | || || | || ||
Sbjct 2093 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 2034
Query 118533 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC 118592
| ||| || || |||| || || || | || | | | || |||||| || |
Sbjct 2033 AAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGC 1974
Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652
|| || || | || | ||||||| | | || | |||||| || || || || |
Sbjct 1973 ACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCA-- 1916
Query 118653 TCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708
|| | ||| ||| ||| |||||| | || ||| |||| ||| | ||
Sbjct 1915 -CAA-ACGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAG 1861
Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768
||||| || |||||||||||||| | |||||| | |||||||| | |||||
Sbjct 1860 CGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTC 1801
Query 118769 CGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 118828
||||| | ||| || || |||||||||| |||| || || ||| |||| ||
Sbjct 1800 TGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCA 1741
Query 118829 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 118888
|| || ||||| |||||||| ||||| || || ||||| ||||||| || ||| || |
Sbjct 1740 GGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTG 1681
Query 118889 CCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
||| || | ||| ||| | ||| | | |||||| | ||| ||| | |||||
Sbjct 1680 CCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTA 1621
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
|| || ||||| || ||| | ||| ||||| || || | || || |
Sbjct 1620 CAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACAT 1561
Query 119009 GAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065
|||||||| ||| | |||| || | ||||||||| ||||| |||||||| |
Sbjct 1560 CAGAGACCAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAGGTCGGGGATCCACAT 1504
Query 119066 CGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124
|| |||| || || | | | ||| || | | || || || || |||||
Sbjct 1503 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCAGCTCCA 1445
Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTA 119180
||||| | | || |||||| || |||||||||| || | | | |||
Sbjct 1444 GGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCT 1385
Query 119181 CGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240
| | || |||||| || || | ||| ||| ||| | || | ||||| || | |
Sbjct 1384 TGTTG-CCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACG 1326
Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGG 119300
| || | ||| | ||| || || || || | | | || || | |
Sbjct 1325 AGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTG 1266
Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360
| || || || ||||| ||| |||| ||||| | || |||| | | || || ||
Sbjct 1265 ACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCG 1206
Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420
|| || || ||||| ||| |||| | |||| ||||||||||| |||| || |||
Sbjct 1205 TAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC 1146
Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465
||| || || ||||||||||| || || | |||||| |||||
Sbjct 1145 CTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1101
>seq25531
Length=26544
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| ||||||| | |||||||||| |||| ||| ||||| || ||
Sbjct 21136 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAA 21195
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273
|||||||||||||| |||| ||| || |||||
Sbjct 21196 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618164541834720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |