Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15996 165 1e-35 seq25531 95.1 1e-14 >seq15996 Length=6831 Score = 165 bits (182), Expect = 1e-35 Identities = 826/1305 (63%), Gaps = 42/1305 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 2384 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2325 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 2324 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 2265 Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || || | |||||| || | || || | |||||| |||| || || Sbjct 2264 TTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 2211 Query 118356 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 118412 |||||||| || | | | || || || || | ||||| || ||||| |||| | Sbjct 2210 TGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 2151 Query 118413 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA 118472 |||| ||| |||||||||| ||||| |||| || || || ||||| || || Sbjct 2150 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094 Query 118473 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 118532 |||| || |||||| | || |||| | || | || || | || || Sbjct 2093 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 2034 Query 118533 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC 118592 | ||| || || |||| || || || | || | | | || |||||| || | Sbjct 2033 AAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGC 1974 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||||| | | || | |||||| || || || || | Sbjct 1973 ACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCA-- 1916 Query 118653 TCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 || | ||| ||| ||| |||||| | || ||| |||| ||| | || Sbjct 1915 -CAA-ACGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAG 1861 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 ||||| || |||||||||||||| | |||||| | |||||||| | ||||| Sbjct 1860 CGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTC 1801 Query 118769 CGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 118828 ||||| | ||| || || |||||||||| |||| || || ||| |||| || Sbjct 1800 TGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCA 1741 Query 118829 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 118888 || || ||||| |||||||| ||||| || || ||||| ||||||| || ||| || | Sbjct 1740 GGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTG 1681 Query 118889 CCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 ||| || | ||| ||| | ||| | | |||||| | ||| ||| | ||||| Sbjct 1680 CCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTA 1621 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || || ||||| || ||| | ||| ||||| || || | || || | Sbjct 1620 CAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACAT 1561 Query 119009 GAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065 |||||||| ||| | |||| || | ||||||||| ||||| |||||||| | Sbjct 1560 CAGAGACCAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAGGTCGGGGATCCACAT 1504 Query 119066 CGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 || |||| || || | | | ||| || | | || || || || ||||| Sbjct 1503 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCAGCTCCA 1445 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTA 119180 ||||| | | || |||||| || |||||||||| || | | | ||| Sbjct 1444 GGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCT 1385 Query 119181 CGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240 | | || |||||| || || | ||| ||| ||| | || | ||||| || | | Sbjct 1384 TGTTG-CCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACG 1326 Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGG 119300 | || | ||| | ||| || || || || | | | || || | | Sbjct 1325 AGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTG 1266 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 | || || || ||||| ||| |||| ||||| | || |||| | | || || || Sbjct 1265 ACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCG 1206 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 || || || ||||| ||| |||| | |||| ||||||||||| |||| || ||| Sbjct 1205 TAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC 1146 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 ||| || || ||||||||||| || || | |||||| ||||| Sbjct 1145 CTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1101 >seq25531 Length=26544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | |||||||||| |||| ||| ||||| || || Sbjct 21136 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAA 21195 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 21196 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618164541834720