Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 179 4e-40
seq95 84.2 3e-11
>seq15996
Length=6831
Score = 179 bits (198), Expect = 4e-40
Identities = 896/1405 (64%), Gaps = 54/1405 (4%)
Strand=Plus/Plus
Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373
||||| ||||| | || || |||||||| || || || || || || |||||||
Sbjct 1101 GTTCACCCACGCCTCCCCCACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAG 1160
Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433
|||||||| |||||| ||||| ||| ||| | || || || | || || | | |
Sbjct 1161 CTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCA 1220
Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-----CA----CATCC-AT- 104482
|||||| | ||||| |||| ||| ||||| || || || || ||||| ||
Sbjct 1221 GTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATC 1280
Query 104483 GATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATT 104542
|| | | |||| || ||| | || || || || | || | || | |
Sbjct 1281 GACGGG-GAGC---TACATCGCC-------GGCACCAACGGCAACTCCAACGGGCTCGTC 1329
Query 104543 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG 104602
|| ||||| | || | ||| ||| ||||| || || | || | || | | | ||
Sbjct 1330 CCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGTCGACCAGGGAGG-CAACAAGAG 1388
Query 104603 G----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 104658
| || | | || | || || ||||| |||||| || | | || ||||| ||
Sbjct 1389 GCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTTCGACGTGTTTGACTTCCTGGA 1448
Query 104659 GTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTG 104718
| || ||| || | |||||| | || | | || || |||| ||| | ||
Sbjct 1449 GCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTG 1508
Query 104719 GATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTG 104775
||| || || || |||||||||||||| |||||| | | |||||||| | ||
Sbjct 1509 GATCCCCGACCTGTTCATGAAGAGAGT---GGAGAGCAACCAAGACTGGTCTCTGATGTG 1565
Query 104776 TCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACA 104834
||| || || || || || ||| ||| | ||| |||||||| || || ||||
Sbjct 1566 TCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTCGAGAAGCTGTACA 1624
Query 104835 CAAAGTACGAGGAAGAAGGTCGGG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAA 104893
| | ||| ||| | || || ||| | | ||| |||| ||| | |||||| |
Sbjct 1625 CCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGT-GGTGAAGGCTCAGCAGGTGTGGCAC 1683
Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953
|| ||| || |||| || || || || ||||| || |||||||| ||||||||||||||
Sbjct 1684 GCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGC 1743
Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013
||| ||||| || || ||||| |||| ||||| || ||| ||||| ||||||
Sbjct 1744 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAA 1803
Query 105014 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073
|| | || | || | | |||||| || |||||||| || || || ||||| |||
Sbjct 1804 ATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTC 1863
Query 105074 CCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133
|| ||| || || ||| ||| ||||| | | ||||||| || ||
Sbjct 1864 AACATGTACGTCACCCCTGAG---CGGACTTTTGACTTTAAAAAACTAGCGTTTGTGACC 1920
Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAG 105190
||| || ||||||| | |||| |||| || | || | ||||| || |||
Sbjct 1921 AAAGTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCCTGA- 1979
Query 105191 ACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCG 105250
|| || || || | | | ||| | || || || |||| || |||||| | ||
Sbjct 1980 --AGCGGAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCA 2037
Query 105251 GATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCG 105310
|| | ||||| || ||| || | || || | ||| || || | ||
Sbjct 2038 GACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATT 2097
Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370
| || ||||||||||| || ||||||| || |||||||| | ||| |||| | |
Sbjct 2098 CAAATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAG 2157
Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTG 105428
|| || || || || | || || ||||| | ||| |||||| | || || | |
Sbjct 2158 CTCGGCCCCTACGAGACGTACGAAGGCTCTCCGG--TCAGCAAGGGCATCCTCCAGTACG 2215
Query 105429 ATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCTCTCAAGGAACGCAT 105486
| ||||||| || || || | | | || | |||||| | || || ||||| ||
Sbjct 2216 ACATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACTGGAAGGCCCTGAAGGAGAAGAT 2273
Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546
| || | || | | ||||| || || |||| || ||||| || |||||||||||
Sbjct 2274 CGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGC 2333
Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 105606
|| ||| |||| || || || | | | ||| ||||||| | |||||||| | ||
Sbjct 2334 CCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAG 2393
Query 105607 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 105666
||| ||||||||||| ||| || || || || | | ||||| | ||||
Sbjct 2394 GGTGCTCTCGGGAGAGTTTCAGATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAG 2453
Query 105667 TGGTCTCTGGTCCAAGGATATGAAG 105691
|| || ||| | |||| ||||||
Sbjct 2454 GGGACTGTGGAGCGAGGAGATGAAG 2478
>seq95
Length=91801
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863
|||||| | | || ||||| || ||||| || |||||||| || || ||| ||
Sbjct 11966 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCC 11907
Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922
|||||||||||||||||| |||| || ||||| || || || |||||||||||| ||
Sbjct 11906 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 11848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583005535910880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |