Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq15996 179 4e-40 seq95 84.2 3e-11 >seq15996 Length=6831 Score = 179 bits (198), Expect = 4e-40 Identities = 896/1405 (64%), Gaps = 54/1405 (4%) Strand=Plus/Plus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| | || || |||||||| || || || || || || ||||||| Sbjct 1101 GTTCACCCACGCCTCCCCCACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAG 1160 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| |||||| ||||| ||| ||| | || || || | || || | | | Sbjct 1161 CTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCA 1220 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-----CA----CATCC-AT- 104482 |||||| | ||||| |||| ||| ||||| || || || || ||||| || Sbjct 1221 GTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATC 1280 Query 104483 GATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATT 104542 || | | |||| || ||| | || || || || | || | || | | Sbjct 1281 GACGGG-GAGC---TACATCGCC-------GGCACCAACGGCAACTCCAACGGGCTCGTC 1329 Query 104543 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG 104602 || ||||| | || | ||| ||| ||||| || || | || | || | | | || Sbjct 1330 CCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGTCGACCAGGGAGG-CAACAAGAG 1388 Query 104603 G----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 104658 | || | | || | || || ||||| |||||| || | | || ||||| || Sbjct 1389 GCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTTCGACGTGTTTGACTTCCTGGA 1448 Query 104659 GTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTG 104718 | || ||| || | |||||| | || | | || || |||| ||| | || Sbjct 1449 GCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTG 1508 Query 104719 GATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTG 104775 ||| || || || |||||||||||||| |||||| | | |||||||| | || Sbjct 1509 GATCCCCGACCTGTTCATGAAGAGAGT---GGAGAGCAACCAAGACTGGTCTCTGATGTG 1565 Query 104776 TCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACA 104834 ||| || || || || || ||| ||| | ||| |||||||| || || |||| Sbjct 1566 TCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTCGAGAAGCTGTACA 1624 Query 104835 CAAAGTACGAGGAAGAAGGTCGGG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAA 104893 | | ||| ||| | || || ||| | | ||| |||| ||| | |||||| | Sbjct 1625 CCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGT-GGTGAAGGCTCAGCAGGTGTGGCAC 1683 Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 || ||| || |||| || || || || ||||| || |||||||| |||||||||||||| Sbjct 1684 GCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGC 1743 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 ||| ||||| || || ||||| |||| ||||| || ||| ||||| |||||| Sbjct 1744 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAA 1803 Query 105014 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073 || | || | || | | |||||| || |||||||| || || || ||||| ||| Sbjct 1804 ATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTC 1863 Query 105074 CCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133 || ||| || || ||| ||| ||||| | | ||||||| || || Sbjct 1864 AACATGTACGTCACCCCTGAG---CGGACTTTTGACTTTAAAAAACTAGCGTTTGTGACC 1920 Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAG 105190 ||| || ||||||| | |||| |||| || | || | ||||| || ||| Sbjct 1921 AAAGTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCCTGA- 1979 Query 105191 ACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCG 105250 || || || || | | | ||| | || || || |||| || |||||| | || Sbjct 1980 --AGCGGAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCA 2037 Query 105251 GATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCG 105310 || | ||||| || ||| || | || || | ||| || || | || Sbjct 2038 GACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATT 2097 Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370 | || ||||||||||| || ||||||| || |||||||| | ||| |||| | | Sbjct 2098 CAAATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAG 2157 Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTG 105428 || || || || || | || || ||||| | ||| |||||| | || || | | Sbjct 2158 CTCGGCCCCTACGAGACGTACGAAGGCTCTCCGG--TCAGCAAGGGCATCCTCCAGTACG 2215 Query 105429 ATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCTCTCAAGGAACGCAT 105486 | ||||||| || || || | | | || | |||||| | || || ||||| || Sbjct 2216 ACATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACTGGAAGGCCCTGAAGGAGAAGAT 2273 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 | || | || | | ||||| || || |||| || ||||| || ||||||||||| Sbjct 2274 CGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGC 2333 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 105606 || ||| |||| || || || | | | ||| ||||||| | |||||||| | || Sbjct 2334 CCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAG 2393 Query 105607 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 105666 ||| ||||||||||| ||| || || || || | | ||||| | |||| Sbjct 2394 GGTGCTCTCGGGAGAGTTTCAGATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAG 2453 Query 105667 TGGTCTCTGGTCCAAGGATATGAAG 105691 || || ||| | |||| |||||| Sbjct 2454 GGGACTGTGGAGCGAGGAGATGAAG 2478 >seq95 Length=91801 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || ||||| || ||||| || |||||||| || || ||| || Sbjct 11966 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCC 11907 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||||||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 11906 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 11848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583005535910880