Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12683 244 3e-59 seq33041 158 4e-33 seq5514 105 2e-17 seq4872 89.7 2e-12 seq16167 84.2 7e-11 >seq12683 Length=55699 Score = 244 bits (270), Expect = 3e-59 Identities = 952/1480 (64%), Gaps = 31/1480 (2%) Strand=Plus/Minus Query 349200 CTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTG 349259 |||| || || ||| | || || || ||||||||||| | ||||| || ||| | Sbjct 10584 CTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGTGTTTTCCAGCATGGCAAAG 10525 Query 349260 TAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCG 349319 | || || || || || || || || |||||||| || || || || || || || | Sbjct 10524 TGGAGATCATCGCCAACGACCAGGGCAACAGAACCACTCCCAGCTATGTGGCCTTCACTG 10465 Query 349320 AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATA 349379 | || ||| | | ||||| ||| |||| || || || | ||| ||||| | || | Sbjct 10464 ACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAATCCCACCAACA 10405 Query 349380 CGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTG 349439 | | ||||| ||||| || || ||||| |||| ||| ||| | || || | Sbjct 10404 CAATCTTTGACGCTAAACGTCTCATTGGGAGAAAGTTTAACGACTCCATTGTCCAGTCCG 10345 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | |||| | || || | || | || | || || || || | | ||| Sbjct 10344 ACATGAAACTCTGGCCATTCAAGGT-GATC--AGTGATAATGGAAAGCCCAAAGTCCAGG 10288 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 |||| || ||||| || || || | |||||||| || ||||| || || ||||| | Sbjct 10287 TTGAGTACAAAGGGGAGACTAAGGCC--TTTTACCCAGAGGAAATCTCCTCCATGGTCCT 10230 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 ||||||||||||||| || ||||| || || | || ||| ||| | |||| || || Sbjct 10229 AGTTAAAATGAAGGAGATCGCTGAGGCCTACCTGGGACAAAAAGTGTCAAATGCGGTCAT 10170 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || ||||| || || ||||| | || || || || || || || Sbjct 10169 CACAGTTCCCGCTTATTTCAACGACTCCCAGAGGCAAGCCACCAAGGACGCCGGGGTGAT 10110 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | || | |||||||| || || || || || ||||| || ||||| ||||| || || Sbjct 10109 CTCTGGACTGAATGTTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATTGCTTACGG 10050 Query 349738 GCTTGATAAA-----ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||| | ||| | || ||| | || || |||||| | ||||| Sbjct 10049 CCTGGACAAAGGTAAAAGAGGG-----GAGCGCAATGTGCTCATCTTTGATCTTGGTGGA 9995 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || || ||||| || || | || || | || || || || ||||| || ||||| || Sbjct 9994 GGCACCTTTGACGTGTCCATCCTGACCATCGAGGACGGTATCTTTGAGGTGAAAGCCACC 9935 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || || || ||||| ||||| || || || ||||| || || | || |||||||| Sbjct 9934 GCGGGAGACACACACCTTGGCGGGGAGGACTTTGACAACCGGATGGTCAACCATTTTGTA 9875 Query 349913 AAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 | |||||||| | || || | || || | | ||| |||||| || | | Sbjct 9874 GAGGAATTTAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAGAGAGCAGTGAGGAGG 9815 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | || || ||||| | || ||| | || | || |||| ||||| | ||| Sbjct 9814 CTGCGCACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCCAGGCTAGCATT 9755 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || ||||| ||| |||| || |||| | || || ||| | || || ||| Sbjct 9754 GAGATCGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGGGCACGCTTT 9695 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 ||||| | || ||||| || | |||| |||| || || || || | | || Sbjct 9694 GAAGAGCTCAACTCCGAGCTTTTCAGGGGAACACTGGAACCAGTTGAGAAGGCCCTGCAA 9635 Query 350153 GATGCAAAAATGTCCAAAAATC-AGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 ||||| || || | || || ||| | ||||| |||| | |||||||| || ||| Sbjct 9634 GATGCCAAGCTGG--ATAAGTCCAGAGTCCATGAAATAGTCCTGGTTGGTGGCTCCACAA 9577 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT--CTAG 350268 | ||||| ||| | || || | | || |||||||| |||| || ||| | || Sbjct 9576 GAATTCCCAAAATCCAGAAGCTTTTGCAGGACTTTTTTAACGGCAGGGA-CCTGAACAAG 9518 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | || | || ||||||||||| || || || ||||||||||| ||||| |||| | Sbjct 9517 AGCA-TCAACCCAGATGAAGCCGTGGCCTACGGTGCTGCTGTCCAGGCTGCTATCCT-CA 9460 Query 350329 TGGAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 ||| | | | ||| || | | ||||| | || || || || |||| || || Sbjct 9459 TGG--GTGACACTTCCGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTC 9402 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 || || | || ||| | |||| ||| ||||| ||| || | || | || | Sbjct 9401 TCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGCAACACCACCAT 9342 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 || || ||| || |||| || || || |||| | ||||| ||||||| || || Sbjct 9341 CCCCACCAAACAGACCCAGACCTTCTCCACATACTCGGATAACCAGCCAGGTGTGCTGAT 9282 Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565 ||| || | || ||||| | || || || || || || || || | ||| Sbjct 9281 TCAGGTGTACGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGA 9222 Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625 || | | || || ||| || |||| || || ||| | || || ||||||| || Sbjct 9221 GCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTACCACAGGTGGAGGTAACTTTCGACAT 9162 Query 350626 TGATTCAAATGGTATTTTAAATGTTACCGCAGTTGaaaaa 350665 ||| | || || ||| | ||||| |||| || || ||| Sbjct 9161 CGATGCCAACGGCATTCTGAATGTGTCCGCCGTCGACAAA 9122 >seq33041 Length=13230 Score = 158 bits (174), Expect = 4e-33 Identities = 365/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| ||||||| ||||| | || ||||||||||||||||| ||| | || || | || Sbjct 2631 AATGTTCTTATCTTTGACCTTGGAGGTGGTACTTTTGATGTGTCAATCCTGACTATCGAG 2572 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 || || || ||||| || || | || |||||||| || || | ||||| ||||||||| Sbjct 2571 GATGGCATCTTTGAGGTCAAGTCCACAGCTGGTGACACTCACTTGGGTGGTGAAGATTTT 2512 Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCT-AAAATTGATAT 349944 ||||| || | ||| || || || || || ||||| |||| | |||| || || Sbjct 2511 GATAACCGCATGGTTAACCACTTCATTGCTGAGTTCAAGCG-CAAGTTCAAAAAGGAAAT 2453 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 | || |||| | ||||| || | || || || |||||||| ||||| | Sbjct 2452 CAACAACAACAAACGAGCTGTCCGTCGTCTGCGCACAGCCTGCGAACGTGCCAAGCGCAC 2393 Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064 | | || | ||||| || |||||| |||||||| || || || |||||| Sbjct 2392 CCTCTCCAGCAGCACCCAGGCCAGTATTGAGATTGATTCACTCTACGAAGGGGTAGATTT 2333 Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCA 350122 || | || || || | ||||| |||||||| | ||| | || || ||| | | | Sbjct 2332 CTACACTTCCATCACCAGGGCTCGTTTTGAAGAGCTCAATGCA--GACCTGTTTCGTGGA 2275 Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 || | || |||||||| || | | | ||||| || ||| || | |||||| || Sbjct 2274 ACCCTCGAGCCTGTGGAGAAGGCCCTGAGGGATGCCAAGATGGATAAGAGTCAGATCCAT 2215 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 || | || | || || || || |||||||| || || ||||| || | || || Sbjct 2214 GATATTGTCCTGGTGGGGGGCTCCACACGTATCCCCAAGATTCAAAAGCTGCTGCAGGAC 2155 Query 350243 TTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGG 350301 || ||||||||| || | | | ||| | || || || ||||| ||||| || ||||| Sbjct 2154 TTGTTTAATGGCCGTGACCTCAACAAGAGC-ATCAACCCTGATGAGGCTGTGGCCTATGG 2096 Query 350302 TGC 350304 ||| Sbjct 2095 TGC 2093 Score = 98.7 bits (108), Expect = 3e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| | |||||| || || ||||||| Sbjct 2884 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCCACCAAAGATG 2825 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||| || || | ||||| || | || || ||||| |||||||||||||| | Sbjct 2824 CTGGAACCATCGCTGGACTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2765 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTA 349769 |||| ||||| || || |||| | || || || || |||||| Sbjct 2764 TTGCTTATGGCCTGGACAAAAAG-GTTACTAACTAATAAAATA 2723 Score = 86.0 bits (94), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 ||||||||||||||||||| || || || || ||||| || | || || ||||| || | Sbjct 2508 TATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCTGTGGACTTGACCTCAAAGATGC 2567 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | || || ||| | | ||||| |||||||| |||||||| || | ||||| Sbjct 2568 CATCCTCGATAGTCAGGATTGACACATCAAAAGTACCACCTCCAAGGTCAAA 2619 >seq5514 Length=41840 Score = 105 bits (116), Expect = 2e-17 Identities = 357/549 (65%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | || || ||||| | || ||||| || ||||| || || | | || Sbjct 37967 GAAAGAAACGTCCTCATCTTTGACCTGGGCGGTGGCACGTTTGACGTCTCCATCTTGACT 37908 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || || | || || || || ||||| | ||||||||| Sbjct 37907 ATTGAAGACGGCATCTTTGAGGTCAAGTCCACAGCAGGCGACACACACTTGGGTGGAGAA 37848 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAAT 349938 || || ||||| || | || || || | ||| || ||||| |||| || | Sbjct 37847 GACTTCGATAACCGCATGGTCAACCACTTCATCGCAGAGTTCAAGCG-CAAGTACAAGAA 37789 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 ||||| | || || ||||| | ||||| || | || || ||||| | || || Sbjct 37788 GGATATCAGCGACAACAAGAGAGCGGTCCGTCGTCTGCGCACCGCTTGTGAGAGGGCGAA 37729 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 ||| | || || || | ||||| || || ||||| |||||||| || || | Sbjct 37728 GCGCACTTTGTCTTCCAGCACCCAGGCCAGCATCGAAATCGATTCTCTGTACGAGGGAAT 37669 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTT 350116 ||||||| | || || ||| | || || ||||| || | | | | || | || Sbjct 37668 CGATTTCTACACCTCAATCACAAGGGCCCGCTTTGAGGAGCTGAACGCA--GACTTATTC 37611 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 ||| ||| |||| |||||||| || | || || || ||| ||| ||| Sbjct 37610 CGAGGAACCCTGGAGCCTGTGGAGAAGTCGCTCCGTGACGCCAAGATGGACAAGGCTCAA 37551 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || | || | || || || || ||||| || |||||||| || | || || | || Sbjct 37550 ATCAACGACATTGTCTTGGTGGGAGGTTCCACTCGTATTCCCAAGATCCAGAAGCTCCTG 37491 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || ||||| ||||| ||||| | | ||| | ||||| || |||||||| || || Sbjct 37490 CAGGACTTTTTCAATGGGAAAGACCTCAATAAGAGC-ATTAACCCCGATGAAGCAGTGGC 37432 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 37431 CTATGGTGC 37423 Score = 86.0 bits (94), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 |||| || ||||| ||||| || ||||| ||||| || || | || || ||||| || | Sbjct 37838 TATCGAAGTCTTCTCCACCCAAGTGTGTGTCGCCTGCTGTGGACTTGACCTCAAAGATGC 37897 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||||| | || || || || ||||| || ||||| |||| ||||| Sbjct 37898 CGTCTTCAATAGTCAAGATGGAGACGTCAAACGTGCCACCGCCCAGGTCAAA 37949 >seq4872 Length=95549 Score = 89.7 bits (98), Expect = 2e-12 Identities = 120/164 (73%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 349248 AAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACG 349307 |||||| ||||| || || || || ||||| ||||||||| | | || |||||||| | Sbjct 782 AAAATGGCCGTGTGGAGATCATCGCCAATGACCAAGGTAACCGCATCACCCCATCATATG 841 Query 349308 TTGCATTTACCG---AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CT 349363 | || || || | | ||||||| ||||||||||| |||| || || | ||||| | Sbjct 842 TGGCCTTCACTGCTGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAA-CCAGCTGACC 900 Query 349364 GCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGG 349407 |||| || || || || || |||||||| ||| | | ||||| Sbjct 901 TCTAACCCTAATAACACCGTCTTTGATGCCAAGAGGTTGATTGG 944 >seq16167 Length=6939 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || |||||||| | || || ||||| || || ||||| ||||| |||| Sbjct 605 CTTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 546 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| ||||||||||| ||||||||| Sbjct 545 TCAGACGCTGCTGATCAGGGGGAATTCCT 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514574670134636