Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq12683 244 3e-59
seq33041 158 4e-33
seq5514 105 2e-17
seq4872 89.7 2e-12
seq16167 84.2 7e-11
>seq12683
Length=55699
Score = 244 bits (270), Expect = 3e-59
Identities = 952/1480 (64%), Gaps = 31/1480 (2%)
Strand=Plus/Minus
Query 349200 CTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTG 349259
|||| || || ||| | || || || ||||||||||| | ||||| || ||| |
Sbjct 10584 CTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGTGTTTTCCAGCATGGCAAAG 10525
Query 349260 TAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCG 349319
| || || || || || || || || |||||||| || || || || || || || |
Sbjct 10524 TGGAGATCATCGCCAACGACCAGGGCAACAGAACCACTCCCAGCTATGTGGCCTTCACTG 10465
Query 349320 AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATA 349379
| || ||| | | ||||| ||| |||| || || || | ||| ||||| | || |
Sbjct 10464 ACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAATCCCACCAACA 10405
Query 349380 CGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTG 349439
| | ||||| ||||| || || ||||| |||| ||| ||| | || || |
Sbjct 10404 CAATCTTTGACGCTAAACGTCTCATTGGGAGAAAGTTTAACGACTCCATTGTCCAGTCCG 10345
Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499
| | |||| | || || | || | || | || || || || | | |||
Sbjct 10344 ACATGAAACTCTGGCCATTCAAGGT-GATC--AGTGATAATGGAAAGCCCAAAGTCCAGG 10288
Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557
|||| || ||||| || || || | |||||||| || ||||| || || ||||| |
Sbjct 10287 TTGAGTACAAAGGGGAGACTAAGGCC--TTTTACCCAGAGGAAATCTCCTCCATGGTCCT 10230
Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617
||||||||||||||| || ||||| || || | || ||| ||| | |||| || ||
Sbjct 10229 AGTTAAAATGAAGGAGATCGCTGAGGCCTACCTGGGACAAAAAGTGTCAAATGCGGTCAT 10170
Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677
|| || || || ||||| || || ||||| | || || || || || || ||
Sbjct 10169 CACAGTTCCCGCTTATTTCAACGACTCCCAGAGGCAAGCCACCAAGGACGCCGGGGTGAT 10110
Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737
| || | |||||||| || || || || || ||||| || ||||| ||||| || ||
Sbjct 10109 CTCTGGACTGAATGTTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATTGCTTACGG 10050
Query 349738 GCTTGATAAA-----ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || ||| | ||| | || ||| | || || |||||| | |||||
Sbjct 10049 CCTGGACAAAGGTAAAAGAGGG-----GAGCGCAATGTGCTCATCTTTGATCTTGGTGGA 9995
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|| || ||||| || || | || || | || || || || ||||| || ||||| ||
Sbjct 9994 GGCACCTTTGACGTGTCCATCCTGACCATCGAGGACGGTATCTTTGAGGTGAAAGCCACC 9935
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|| || || ||||| ||||| || || || ||||| || || | || ||||||||
Sbjct 9934 GCGGGAGACACACACCTTGGCGGGGAGGACTTTGACAACCGGATGGTCAACCATTTTGTA 9875
Query 349913 AAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972
| |||||||| | || || | || || | | ||| |||||| || | |
Sbjct 9874 GAGGAATTTAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAGAGAGCAGTGAGGAGG 9815
Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032
|| | || || ||||| | || ||| | || | || |||| ||||| | |||
Sbjct 9814 CTGCGCACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCCAGGCTAGCATT 9755
Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092
|| || || ||||| ||| |||| || |||| | || || ||| | || || |||
Sbjct 9754 GAGATCGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGGGCACGCTTT 9695
Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152
||||| | || ||||| || | |||| |||| || || || || | | ||
Sbjct 9694 GAAGAGCTCAACTCCGAGCTTTTCAGGGGAACACTGGAACCAGTTGAGAAGGCCCTGCAA 9635
Query 350153 GATGCAAAAATGTCCAAAAATC-AGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210
||||| || || | || || ||| | ||||| |||| | |||||||| || |||
Sbjct 9634 GATGCCAAGCTGG--ATAAGTCCAGAGTCCATGAAATAGTCCTGGTTGGTGGCTCCACAA 9577
Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT--CTAG 350268
| ||||| ||| | || || | | || |||||||| |||| || ||| | ||
Sbjct 9576 GAATTCCCAAAATCCAGAAGCTTTTGCAGGACTTTTTTAACGGCAGGGA-CCTGAACAAG 9518
Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328
| || | || ||||||||||| || || || ||||||||||| ||||| |||| |
Sbjct 9517 AGCA-TCAACCCAGATGAAGCCGTGGCCTACGGTGCTGCTGTCCAGGCTGCTATCCT-CA 9460
Query 350329 TGGAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385
||| | | | ||| || | | ||||| | || || || || |||| || ||
Sbjct 9459 TGG--GTGACACTTCCGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTC 9402
Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445
|| || | || ||| | |||| ||| ||||| ||| || | || | || |
Sbjct 9401 TCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGCAACACCACCAT 9342
Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505
|| || ||| || |||| || || || |||| | ||||| ||||||| || ||
Sbjct 9341 CCCCACCAAACAGACCCAGACCTTCTCCACATACTCGGATAACCAGCCAGGTGTGCTGAT 9282
Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565
||| || | || ||||| | || || || || || || || || | |||
Sbjct 9281 TCAGGTGTACGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGA 9222
Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625
|| | | || || ||| || |||| || || ||| | || || ||||||| ||
Sbjct 9221 GCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTACCACAGGTGGAGGTAACTTTCGACAT 9162
Query 350626 TGATTCAAATGGTATTTTAAATGTTACCGCAGTTGaaaaa 350665
||| | || || ||| | ||||| |||| || || |||
Sbjct 9161 CGATGCCAACGGCATTCTGAATGTGTCCGCCGTCGACAAA 9122
>seq33041
Length=13230
Score = 158 bits (174), Expect = 4e-33
Identities = 365/543 (67%), Gaps = 8/543 (1%)
Strand=Plus/Minus
Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825
||| ||||||| ||||| | || ||||||||||||||||| ||| | || || | ||
Sbjct 2631 AATGTTCTTATCTTTGACCTTGGAGGTGGTACTTTTGATGTGTCAATCCTGACTATCGAG 2572
Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885
|| || || ||||| || || | || |||||||| || || | ||||| |||||||||
Sbjct 2571 GATGGCATCTTTGAGGTCAAGTCCACAGCTGGTGACACTCACTTGGGTGGTGAAGATTTT 2512
Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCT-AAAATTGATAT 349944
||||| || | ||| || || || || || ||||| |||| | |||| || ||
Sbjct 2511 GATAACCGCATGGTTAACCACTTCATTGCTGAGTTCAAGCG-CAAGTTCAAAAAGGAAAT 2453
Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004
| || |||| | ||||| || | || || || |||||||| ||||| |
Sbjct 2452 CAACAACAACAAACGAGCTGTCCGTCGTCTGCGCACAGCCTGCGAACGTGCCAAGCGCAC 2393
Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064
| | || | ||||| || |||||| |||||||| || || || ||||||
Sbjct 2392 CCTCTCCAGCAGCACCCAGGCCAGTATTGAGATTGATTCACTCTACGAAGGGGTAGATTT 2333
Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCA 350122
|| | || || || | ||||| |||||||| | ||| | || || ||| | | |
Sbjct 2332 CTACACTTCCATCACCAGGGCTCGTTTTGAAGAGCTCAATGCA--GACCTGTTTCGTGGA 2275
Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182
|| | || |||||||| || | | | ||||| || ||| || | |||||| ||
Sbjct 2274 ACCCTCGAGCCTGTGGAGAAGGCCCTGAGGGATGCCAAGATGGATAAGAGTCAGATCCAT 2215
Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242
|| | || | || || || || |||||||| || || ||||| || | || ||
Sbjct 2214 GATATTGTCCTGGTGGGGGGCTCCACACGTATCCCCAAGATTCAAAAGCTGCTGCAGGAC 2155
Query 350243 TTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGG 350301
|| ||||||||| || | | | ||| | || || || ||||| ||||| || |||||
Sbjct 2154 TTGTTTAATGGCCGTGACCTCAACAAGAGC-ATCAACCCTGATGAGGCTGTGGCCTATGG 2096
Query 350302 TGC 350304
|||
Sbjct 2095 TGC 2093
Score = 98.7 bits (108), Expect = 3e-15
Identities = 121/163 (74%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
|||| ||||| || || || || || || ||||| | |||||| || || |||||||
Sbjct 2884 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCCACCAAAGATG 2825
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| | ||| || || | ||||| || | || || ||||| |||||||||||||| |
Sbjct 2824 CTGGAACCATCGCTGGACTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2765
Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTA 349769
|||| ||||| || || |||| | || || || || ||||||
Sbjct 2764 TTGCTTATGGCCTGGACAAAAAG-GTTACTAACTAATAAAATA 2723
Score = 86.0 bits (94), Expect = 2e-11
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738
||||||||||||||||||| || || || || ||||| || | || || ||||| || |
Sbjct 2508 TATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCTGTGGACTTGACCTCAAAGATGC 2567
Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
| || || ||| | | ||||| |||||||| |||||||| || | |||||
Sbjct 2568 CATCCTCGATAGTCAGGATTGACACATCAAAAGTACCACCTCCAAGGTCAAA 2619
>seq5514
Length=41840
Score = 105 bits (116), Expect = 2e-17
Identities = 357/549 (65%), Gaps = 8/549 (1%)
Strand=Plus/Minus
Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819
|||| ||| | || || ||||| | || ||||| || ||||| || || | | ||
Sbjct 37967 GAAAGAAACGTCCTCATCTTTGACCTGGGCGGTGGCACGTTTGACGTCTCCATCTTGACT 37908
Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879
||||||| || || ||||| || || | || || || || ||||| | |||||||||
Sbjct 37907 ATTGAAGACGGCATCTTTGAGGTCAAGTCCACAGCAGGCGACACACACTTGGGTGGAGAA 37848
Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAAT 349938
|| || ||||| || | || || || | ||| || ||||| |||| || |
Sbjct 37847 GACTTCGATAACCGCATGGTCAACCACTTCATCGCAGAGTTCAAGCG-CAAGTACAAGAA 37789
Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998
||||| | || || ||||| | ||||| || | || || ||||| | || ||
Sbjct 37788 GGATATCAGCGACAACAAGAGAGCGGTCCGTCGTCTGCGCACCGCTTGTGAGAGGGCGAA 37729
Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058
||| | || || || | ||||| || || ||||| |||||||| || || |
Sbjct 37728 GCGCACTTTGTCTTCCAGCACCCAGGCCAGCATCGAAATCGATTCTCTGTACGAGGGAAT 37669
Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTT 350116
||||||| | || || ||| | || || ||||| || | | | | || | ||
Sbjct 37668 CGATTTCTACACCTCAATCACAAGGGCCCGCTTTGAGGAGCTGAACGCA--GACTTATTC 37611
Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176
||| ||| |||| |||||||| || | || || || ||| ||| |||
Sbjct 37610 CGAGGAACCCTGGAGCCTGTGGAGAAGTCGCTCCGTGACGCCAAGATGGACAAGGCTCAA 37551
Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236
|| | || | || || || || ||||| || |||||||| || | || || | ||
Sbjct 37550 ATCAACGACATTGTCTTGGTGGGAGGTTCCACTCGTATTCCCAAGATCCAGAAGCTCCTG 37491
Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295
|| ||||| ||||| ||||| | | ||| | ||||| || |||||||| || ||
Sbjct 37490 CAGGACTTTTTCAATGGGAAAGACCTCAATAAGAGC-ATTAACCCCGATGAAGCAGTGGC 37432
Query 350296 ATATGGTGC 350304
||||||||
Sbjct 37431 CTATGGTGC 37423
Score = 86.0 bits (94), Expect = 2e-11
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738
|||| || ||||| ||||| || ||||| ||||| || || | || || ||||| || |
Sbjct 37838 TATCGAAGTCTTCTCCACCCAAGTGTGTGTCGCCTGCTGTGGACTTGACCTCAAAGATGC 37897
Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
||||||||||| | || || || || ||||| || ||||| |||| |||||
Sbjct 37898 CGTCTTCAATAGTCAAGATGGAGACGTCAAACGTGCCACCGCCCAGGTCAAA 37949
>seq4872
Length=95549
Score = 89.7 bits (98), Expect = 2e-12
Identities = 120/164 (73%), Gaps = 5/164 (3%)
Strand=Plus/Plus
Query 349248 AAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACG 349307
|||||| ||||| || || || || ||||| ||||||||| | | || |||||||| |
Sbjct 782 AAAATGGCCGTGTGGAGATCATCGCCAATGACCAAGGTAACCGCATCACCCCATCATATG 841
Query 349308 TTGCATTTACCG---AAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CT 349363
| || || || | | ||||||| ||||||||||| |||| || || | ||||| |
Sbjct 842 TGGCCTTCACTGCTGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAA-CCAGCTGACC 900
Query 349364 GCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGG 349407
|||| || || || || || |||||||| ||| | | |||||
Sbjct 901 TCTAACCCTAATAACACCGTCTTTGATGCCAAGAGGTTGATTGG 944
>seq16167
Length=6939
Score = 84.2 bits (92), Expect = 7e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607
|||| || || || |||||||| | || || ||||| || || ||||| ||||| ||||
Sbjct 605 CTTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 546
Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636
| ||||| ||||||||||| |||||||||
Sbjct 545 TCAGACGCTGCTGATCAGGGGGAATTCCT 517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514574670134636
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