Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 370 1e-97
seq95 102 9e-17
seq25531 96.9 4e-15
>seq15996
Length=6831
Score = 370 bits (410), Expect = 1e-97
Identities = 887/1331 (67%), Gaps = 43/1331 (3%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
|||||||||| | ||||| | |||| | ||||||||| |||| |||||||||||| ||
Sbjct 2385 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 2326
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
||| || ||||| || || | ||| || |||| | || ||| | ||||| |
Sbjct 2325 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTC 2266
Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| ||| | | ||| | || | | || || |||||||||| || ||
Sbjct 2265 CTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 2206
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767
||| |||| | |||| || || | | |||||||||| | || ||| ||| ||
Sbjct 2205 GATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAG 2146
Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827
||||| | | |||||| |||| ||| | | ||| ||||| |||| |||
Sbjct 2145 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAG 2086
Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGCC 78884
| |||| || ||||||| || | |||| | ||||| | || |||| ||
Sbjct 2085 CTGAGCCTCGGGGCTTTCGAACG---GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACC 2029
Query 78885 CTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-- 78942
||| |||||||| ||||||| | ||||||| ||||| ||| |||| || | |
Sbjct 2028 CTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCT---CCGCTTCAGGCAC 1972
Query 78943 -GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001
||||| |||| ||||| | ||||| ||| || ||| |||||
Sbjct 1971 TGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAA 1912
Query 79002 GTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-----GTAG-GCAC-A 79054
| ||| || |||||| ||| | | | | || || | || | |
Sbjct 1911 CGCTAGTTTTTTAAAGTCAAAAG----TCCGCTCAGGGGTGACGTACATGTTGAGCGCGA 1856
Query 79055 GCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGC 79114
|| ||||| || ||||| || ||| || ||| | ||| | ||||||||||
Sbjct 1855 TGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGC 1796
Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174
| | || ||||||||||| | |||| ||||||||||||| ||| |||||||
Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736
Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234
| ||||| |||||||||||| ||||| || ||| || || || | ||| ||| |
Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACA 1676
Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294
| | | ||| || || |||| || |||| | ||||| ||||| ||
Sbjct 1675 CCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCT 1616
Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354
| ||| ||||||| || ||| ||| || |||||||||| ||| ||||||||
Sbjct 1615 TCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAG 1556
Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414
|||||| | || |||| || ||| |||||| ||||| |||||||||| ||| ||
Sbjct 1555 ACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGA 1496
Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474
| ||||| | | | | |||||| | || |||| |||||| || ||||| |
Sbjct 1495 AAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAA 1436
Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534
| |||| |||||| |||||||| || ||||| |||| || | |||| ||| |
Sbjct 1435 ACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTC 1376
Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594
|||||| |||||| || |||||||||||| | |||| |||||||| |||| |||| ||
Sbjct 1375 CCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGG 1316
Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCAG-TG--- 79649
| |||||| || ||| || |||| |||| |||| | || |||| ||
Sbjct 1315 AGTTGCCGTTGGTGCCGGCGA----TGTA--GCTC-CCCGTCGATCGGATGCAGCTGACC 1263
Query 79650 --GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707
| ||||| ||||||| | ||||||||||| | || |||| ||| ||||| |||||
Sbjct 1262 GCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAA 1203
Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTG 79767
||||| ||||| |||||||||||| |||| |||||||||||| |||| |||||| ||
Sbjct 1202 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 1143
Query 79768 TTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGA 79827
|| || || ||||||||||| || || | ||||| ||||| |||| | || |||
Sbjct 1142 TTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 1083
Query 79828 TCGTACGTCTC 79838
| |||||||||
Sbjct 1082 TTGTACGTCTC 1072
Score = 313 bits (346), Expect = 3e-80
Identities = 869/1330 (65%), Gaps = 41/1330 (3%)
Strand=Plus/Plus
Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225
||||| ||| ||||| || |||||| ||||| ||||| | || || || ||||||
Sbjct 1072 GAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 1131
Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285
|| || || |||| || ||| |||| ||||| ||||| | || |||||||| ||||||
Sbjct 1132 GCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGC 1191
Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345
|| || ||||| ||||| ||||| ||| |||| || | ||||||||||| | |||||||
Sbjct 1192 ATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGA 1251
Query 19346 ATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399
||||| | || |||| ||||| |||| || | ||| || ||
Sbjct 1252 ATCGGCGTGGCGGTCAGCTGC------ATCCGATCGACGGGGAGCTACATCGCCGGCACC 1305
Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459
||||| || |||| ||||||| ||||| | |||| |||||||||||| | |||
Sbjct 1306 AACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTAC 1365
Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519
||| ||||||| ||| ||| | || |||| ||||| ||||| ||||| ||||||
Sbjct 1366 GTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCAC 1425
Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579
||||| | || ||||| || ||| |||| || | |||||| | |
Sbjct 1426 TTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCC 1485
Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639
| ||||| ||| ||| ||||||| || ||||| |||||| ||| || |||| ||
Sbjct 1486 AGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAAC 1545
Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699
|||| ||| |||||||| ||| |||| ||||| || || ||| || || |||
Sbjct 1546 CAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAG 1605
Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759
| |||| | || ||||| || || | |||| || ||||| ||||| |
Sbjct 1606 GAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGTGGTGAAG 1665
Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819
|| | | | || ||| || | | || | |||| || ||||| || |||||||||
Sbjct 1666 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATG 1725
Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879
||||| |||||| ||| ||| || ||| |||| | ||| | |||||
Sbjct 1726 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 1785
Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939
|||||| || || ||||| | ||| ||| || ||| || |||||||||
Sbjct 1786 AGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAAT 1845
Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGC 19992
||||| ||| | || | | ||||| | ||| | || ||||||
Sbjct 1846 CTGGCCTCCATCGCGCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAA 1901
Query 19993 CAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052
||| | |||||| ||| || || |||| | ||||| ||
Sbjct 1902 AAAACTAGCGTTTGTGACCAAAGTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAA 1961
Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109
|| ||||| | | || |||| | ||||| || | ||||||| ||||||||| ||
Sbjct 1962 CTACTACCCAGTGCCTGAAGCGGAG---AAGTCCAACAAGCGCCACAGGCCGATCGGAAT 2018
Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169
|||||| ||||| |||| |||| ||||| | | || | | ||||| ||| |
Sbjct 2019 CGGCGTGCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGA 2078
Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229
||| | ||| |||| ||||| ||| || | ||| |||| || |||||| |
Sbjct 2079 GGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACTACGCCGC---CCTGGAGGC 2135
Query 20230 G---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286
| ||||| || ||| ||| |||||| |||||||||| | | || || || |
Sbjct 2136 GAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAG 2195
Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTTTTGGAG 20340
| |||| ||||||||| ||||||||| | || ||| || | ||||
Sbjct 2196 CAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGCTGGACTGGAA 2255
Query 20341 CGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400
||||| |||| ||||| | ||||| | | ||| |||| | || || ||
Sbjct 2256 GGCCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGAT 2315
Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGAC 20460
||| || ||||| |||||||||||| |||| ||||||||| | |||| | ||||| |
Sbjct 2316 GCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAG 2375
Query 20461 CAACATCTAC 20470
||||||||||
Sbjct 2376 CAACATCTAC 2385
>seq95
Length=91801
Score = 102 bits (112), Expect = 9e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050
||||||||| ||||| ||||| |||||||| ||||| ||| ||| |||| ||||||
Sbjct 11954 GCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCCATTTATTGGCTC 11895
Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110
|| ||| | || || ||||| ||||| | | |||||||||||||||| | |||| |||
Sbjct 11894 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGATGAG 11835
Query 60111 G 60111
|
Sbjct 11834 G 11834
>seq25531
Length=26544
Score = 96.9 bits (106), Expect = 4e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|| || ||||||| ||| || ||||||||||| | |||| ||||||||||||| |
Sbjct 22120 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 22179
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||||||||||||| |||||| ||||| ||||||||
Sbjct 22180 TTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTC 22220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548284738121280
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