Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq15996 370 1e-97 seq95 102 9e-17 seq25531 96.9 4e-15 >seq15996 Length=6831 Score = 370 bits (410), Expect = 1e-97 Identities = 887/1331 (67%), Gaps = 43/1331 (3%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| | |||| | ||||||||| |||| |||||||||||| || Sbjct 2385 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 2326 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| || || | ||| || |||| | || ||| | ||||| | Sbjct 2325 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTC 2266 Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| ||| | | ||| | || | | || || |||||||||| || || Sbjct 2265 CTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 2206 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 ||| |||| | |||| || || | | |||||||||| | || ||| ||| || Sbjct 2205 GATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAG 2146 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||||| | | |||||| |||| ||| | | ||| ||||| |||| ||| Sbjct 2145 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAG 2086 Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGCC 78884 | |||| || ||||||| || | |||| | ||||| | || |||| || Sbjct 2085 CTGAGCCTCGGGGCTTTCGAACG---GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACC 2029 Query 78885 CTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-- 78942 ||| |||||||| ||||||| | ||||||| ||||| ||| |||| || | | Sbjct 2028 CTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCT---CCGCTTCAGGCAC 1972 Query 78943 -GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||||| |||| ||||| | ||||| ||| || ||| ||||| Sbjct 1971 TGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAA 1912 Query 79002 GTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-----GTAG-GCAC-A 79054 | ||| || |||||| ||| | | | | || || | || | | Sbjct 1911 CGCTAGTTTTTTAAAGTCAAAAG----TCCGCTCAGGGGTGACGTACATGTTGAGCGCGA 1856 Query 79055 GCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGC 79114 || ||||| || ||||| || ||| || ||| | ||| | |||||||||| Sbjct 1855 TGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGC 1796 Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 | | || ||||||||||| | |||| ||||||||||||| ||| ||||||| Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234 | ||||| |||||||||||| ||||| || ||| || || || | ||| ||| | Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACA 1676 Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | | | ||| || || |||| || |||| | ||||| ||||| || Sbjct 1675 CCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCT 1616 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| ||||||| || ||| ||| || |||||||||| ||| |||||||| Sbjct 1615 TCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAG 1556 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||| | || |||| || ||| |||||| ||||| |||||||||| ||| || Sbjct 1555 ACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGA 1496 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | ||||| | | | | |||||| | || |||| |||||| || ||||| | Sbjct 1495 AAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAA 1436 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 | |||| |||||| |||||||| || ||||| |||| || | |||| ||| | Sbjct 1435 ACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTC 1376 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| |||||| || |||||||||||| | |||| |||||||| |||| |||| || Sbjct 1375 CCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGG 1316 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCAG-TG--- 79649 | |||||| || ||| || |||| |||| |||| | || |||| || Sbjct 1315 AGTTGCCGTTGGTGCCGGCGA----TGTA--GCTC-CCCGTCGATCGGATGCAGCTGACC 1263 Query 79650 --GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707 | ||||| ||||||| | ||||||||||| | || |||| ||| ||||| ||||| Sbjct 1262 GCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAA 1203 Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTG 79767 ||||| ||||| |||||||||||| |||| |||||||||||| |||| |||||| || Sbjct 1202 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 1143 Query 79768 TTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGA 79827 || || || ||||||||||| || || | ||||| ||||| |||| | || ||| Sbjct 1142 TTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 1083 Query 79828 TCGTACGTCTC 79838 | ||||||||| Sbjct 1082 TTGTACGTCTC 1072 Score = 313 bits (346), Expect = 3e-80 Identities = 869/1330 (65%), Gaps = 41/1330 (3%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| | || || || |||||| Sbjct 1072 GAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 1131 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || |||||||| |||||| Sbjct 1132 GCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGC 1191 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||| ||||| ||||| ||| |||| || | ||||||||||| | ||||||| Sbjct 1192 ATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGA 1251 Query 19346 ATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 ||||| | || |||| ||||| |||| || | ||| || || Sbjct 1252 ATCGGCGTGGCGGTCAGCTGC------ATCCGATCGACGGGGAGCTACATCGCCGGCACC 1305 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| || |||| ||||||| ||||| | |||| |||||||||||| | ||| Sbjct 1306 AACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTAC 1365 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| ||| | || |||| ||||| ||||| ||||| |||||| Sbjct 1366 GTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCAC 1425 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 ||||| | || ||||| || ||| |||| || | |||||| | | Sbjct 1426 TTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCC 1485 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 | ||||| ||| ||| ||||||| || ||||| |||||| ||| || |||| || Sbjct 1486 AGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAAC 1545 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 |||| ||| |||||||| ||| |||| ||||| || || ||| || || ||| Sbjct 1546 CAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAG 1605 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | |||| | || ||||| || || | |||| || ||||| ||||| | Sbjct 1606 GAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGTGGTGAAG 1665 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | || ||| || | | || | |||| || ||||| || ||||||||| Sbjct 1666 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATG 1725 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 ||||| |||||| ||| ||| || ||| |||| | ||| | ||||| Sbjct 1726 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 1785 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 |||||| || || ||||| | ||| ||| || ||| || ||||||||| Sbjct 1786 AGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAAT 1845 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGC 19992 ||||| ||| | || | | ||||| | ||| | || |||||| Sbjct 1846 CTGGCCTCCATCGCGCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAA 1901 Query 19993 CAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052 ||| | |||||| ||| || || |||| | ||||| || Sbjct 1902 AAAACTAGCGTTTGTGACCAAAGTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAA 1961 Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 || ||||| | | || |||| | ||||| || | ||||||| ||||||||| || Sbjct 1962 CTACTACCCAGTGCCTGAAGCGGAG---AAGTCCAACAAGCGCCACAGGCCGATCGGAAT 2018 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169 |||||| ||||| |||| |||| ||||| | | || | | ||||| ||| | Sbjct 2019 CGGCGTGCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGA 2078 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 ||| | ||| |||| ||||| ||| || | ||| |||| || |||||| | Sbjct 2079 GGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACTACGCCGC---CCTGGAGGC 2135 Query 20230 G---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 | ||||| || ||| ||| |||||| |||||||||| | | || || || | Sbjct 2136 GAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAG 2195 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTTTTGGAG 20340 | |||| ||||||||| ||||||||| | || ||| || | |||| Sbjct 2196 CAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGCTGGACTGGAA 2255 Query 20341 CGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400 ||||| |||| ||||| | ||||| | | ||| |||| | || || || Sbjct 2256 GGCCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGAT 2315 Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGAC 20460 ||| || ||||| |||||||||||| |||| ||||||||| | |||| | ||||| | Sbjct 2316 GCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAG 2375 Query 20461 CAACATCTAC 20470 |||||||||| Sbjct 2376 CAACATCTAC 2385 >seq95 Length=91801 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| ||||| |||||||| ||||| ||| ||| |||| |||||| Sbjct 11954 GCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCCATTTATTGGCTC 11895 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| | |||| ||| Sbjct 11894 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGATGAG 11835 Query 60111 G 60111 | Sbjct 11834 G 11834 >seq25531 Length=26544 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || || ||||||| ||| || ||||||||||| | |||| ||||||||||||| | Sbjct 22120 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 22179 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| ||||| |||||||| Sbjct 22180 TTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTC 22220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548284738121280