Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15996 246 3e-60 >seq15996 Length=6831 Score = 246 bits (272), Expect = 3e-60 Identities = 494/726 (68%), Gaps = 10/726 (1%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | || || || ||||| Sbjct 1071 TGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 1130 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || |||||||| ||| Sbjct 1131 CGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAG 1190 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||| | | || || Sbjct 1191 CATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGG 1250 Query 53422 TATCGGTAT---CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 ||||| | | ||| | |||| ||| || | ||| || || || Sbjct 1251 AATCGGCGTGGCGGTCAGCT---GCATCCGATCGACGGGGAGCTACATCGCCGGCACCAA 1307 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | || | || |||| || ||||| | |||| |||||||||||| || ||||| Sbjct 1308 CGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGT 1367 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | ||||||| || ||| | || |||| ||||| ||||| ||||| |||||| Sbjct 1368 CGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTT 1427 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | || || || |||||| ||| || | || ||| | | | | Sbjct 1428 CGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAG 1487 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 ||||| || ||| || ||||||| || ||||| |||||| | | ||||||| || Sbjct 1488 AGACCTTTTCTAC-GCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACC 1546 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAG 53776 | || |||| |||||||| ||||||||||||||||| || | | ||| || || ||| Sbjct 1547 AAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAG 1605 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAG 53836 ||||| | || |||| ||||| | |||| | |||| ||| ||| Sbjct 1606 GAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGTGGTGAAG 1665 Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 || | |||| ||| | || || || || |||| ||| || || |||||||||||| Sbjct 1666 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATG 1725 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 ||||| || | |||| ||||||||||||| |||| | ||| ||||||| Sbjct 1726 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 1785 Query 53957 AGCAAC 53962 |||||| Sbjct 1786 AGCAAC 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546976510917600