Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 246 3e-60
>seq15996
Length=6831
Score = 246 bits (272), Expect = 3e-60
Identities = 494/726 (68%), Gaps = 10/726 (1%)
Strand=Plus/Plus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
|||||||||| || | || | |||| || || |||||| | || || || |||||
Sbjct 1071 TGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 1130
Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
||| || || || || ||| |||| |||||||||||| | || |||||||| |||
Sbjct 1131 CGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAG 1190
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||| | | || ||
Sbjct 1191 CATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGG 1250
Query 53422 TATCGGTAT---CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478
||||| | | ||| | |||| ||| || | ||| || || ||
Sbjct 1251 AATCGGCGTGGCGGTCAGCT---GCATCCGATCGACGGGGAGCTACATCGCCGGCACCAA 1307
Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538
|||| | || | || |||| || ||||| | |||| |||||||||||| || |||||
Sbjct 1308 CGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTACGT 1367
Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598
| ||||||| || ||| | || |||| ||||| ||||| ||||| ||||||
Sbjct 1368 CGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTT 1427
Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658
|||| | | || || || |||||| ||| || | || ||| | | | |
Sbjct 1428 CGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAG 1487
Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717
||||| || ||| || ||||||| || ||||| |||||| | | ||||||| ||
Sbjct 1488 AGACCTTTTCTAC-GCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACC 1546
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAG 53776
| || |||| |||||||| ||||||||||||||||| || | | ||| || || |||
Sbjct 1547 AAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAG 1605
Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAG 53836
||||| | || |||| ||||| | |||| | |||| ||| |||
Sbjct 1606 GAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGTGGTGAAG 1665
Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896
|| | |||| ||| | || || || || |||| ||| || || ||||||||||||
Sbjct 1666 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATG 1725
Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956
||||| || | |||| ||||||||||||| |||| | ||| |||||||
Sbjct 1726 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 1785
Query 53957 AGCAAC 53962
||||||
Sbjct 1786 AGCAAC 1791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546976510917600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |