Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15996 255 7e-63 seq471 120 3e-22 seq25531 98.7 1e-15 seq21676 87.8 2e-12 >seq15996 Length=6831 Score = 255 bits (282), Expect = 7e-63 Identities = 834/1278 (65%), Gaps = 57/1278 (4%) Strand=Plus/Minus Query 80412 CTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGA 80471 ||||||||| || |||||||| || ||| ||||| ||||||||| | | || ||| Sbjct 2355 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 2296 Query 80472 ATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAAC 80531 |||| || ||||||||| ||| | ||| || | ||| || | | | Sbjct 2295 GTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAG---TCCAGCAGGTC 2239 Query 80532 GCTGTGAC------CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCC 80583 | || | |||||||||||| ||| | |||||||| | ||| |||||| || Sbjct 2238 GGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC--CGGAGAGCCT 2181 Query 80584 GCGAACGTCTCGTACGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGG 80637 || |||||||||| ||||| ||| | ||||||||| || || ||||| || Sbjct 2180 TCGTACGTCTCGTAGGGGCCGAGCTCAGC---GGCCAGCTCGCAGCTCGCCTCCA---GG 2127 Query 80638 GCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTC 80696 || |||| || ||| |||||||| |||||| | || | |||| ||| || Sbjct 2126 GCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAG-CAGCTGAGCCTCGGGGCTTTC 2068 Query 80697 GAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGG 80756 ||||| ||| ||| | ||||| |||| |||| ||||| |||||||| ||||||| Sbjct 2067 GAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGG 2008 Query 80757 GCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGAC 80816 | |||||||||||| || ||| || || || | |||||| |||| | ||||| | Sbjct 2007 CCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAAT 1948 Query 80817 GCGGTTCAGGTTGCGTGTAACAACCCGT---GTAACATCATGAAGTTTCTGAAAGTCGAA 80873 ||||| ||| | | || | | || ||| ||||| | |||||| || Sbjct 1947 CTTGTTCAAGTT---TTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAA 1891 Query 80874 TTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGG 80926 ||| || || || || | | | | || ||| |||||||| ||||| | Sbjct 1890 AG---TCCGCT-CAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCG 1835 Query 80927 CCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTG 80986 | ||||| || | || |||| || ||||| ||||| | || || || | Sbjct 1834 CTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGG 1775 Query 80987 TACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGG 81046 | ||||| || | |||||| ||| |||||| ||||| ||||| ||||||||| | Sbjct 1774 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 1715 Query 81047 TACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCT 81106 ||||||| || ||| |||| || ||||||| ||| | || | ||||| ||||| Sbjct 1714 TACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCAC-- 1657 Query 81107 TGCG---GAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCG 81162 ||| || | || || | ||||| ||| ||| |||||| ||||||| | || Sbjct 1656 -GCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTC-TCGAACTCCTCCCCC 1599 Query 81163 TGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTC 81222 || || | ||||||||||| || |||||||| |||||| || | || Sbjct 1598 CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTC 1539 Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGC 81282 || || ||||||||| ||| |||||||| | |||| ||| ||||| | | | | Sbjct 1538 TCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTC 1479 Query 81283 GCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCAT 81342 |||||| | || ||| || ||| || ||||| | | ||| ||||| Sbjct 1478 TGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAG 1419 Query 81343 GGCTCCAGATACACGGCGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACG 81398 |||||||| |||| ||| | || | || || | ||| ||||||| ||||||||| Sbjct 1418 GGCTCCAGGTACATGGCAAACG-CTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACG 1360 Query 81399 GGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACC 81458 || || ||| | || | || ||| |||| || || | || | ||||| || || Sbjct 1359 CGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC 1300 Query 81459 CACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCA 81518 |||| |||| | | || | ||||| | | ||||| || || | | | Sbjct 1299 GGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGA 1240 Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578 ||| || || | |||||| | |||| || || ||||| || |||||||| || | || Sbjct 1239 CTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTT 1180 Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638 |||| | |||| ||| ||||| |||| ||| || || || | || || ||||| || || Sbjct 1179 CATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGT 1120 Query 81639 TGGGGTCGCGTGAATGAA 81656 |||| ||||| |||| Sbjct 1119 GGGGGAGGCGTGGGTGAA 1102 >seq471 Length=23154 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 16642 ATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 16701 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || ||||| || ||||| ||||||||||| || || |||||| Sbjct 16702 GACACCATCGAGAACGTCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAG 16761 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || || || || || || | || || || | ||||| || Sbjct 16762 CAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 16821 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || || || || Sbjct 16822 ATCCAGAAGGAGTCCACCCTCCACCTGGT 16850 >seq25531 Length=26544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || |||||||||| ||| || || || || ||||| || | |||||| Sbjct 22112 ACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 22171 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || ||||||||||| ||| |||| Sbjct 22172 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGAGACT 22231 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 22232 CAATGATGGCGTACCACAGCTGCTGAGCCTTCACCAC 22268 >seq21676 Length=13877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| || ||||||| || || ||||||||||| || ||||| || || |||||| | Sbjct 112 CATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAG 53 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || |||||||| ||||| || ||||||| || ||||| | ||||| Sbjct 52 GCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCCGACTA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570060803653440