Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq27843 156 3e-33 seq11398 114 1e-20 >seq27843 Length=4971 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | | Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| ||||||||| || || ||||||||| || || |||| Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976 Score = 138 bits (152), Expect = 9e-28 Identities = 135/173 (78%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || ||||||||||||||||| ||||| ||||||||||| Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || | | ||| || ||||||| ||||| | ||| |||||||| || Sbjct 3012 GCCTTCCTCTCGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATC 3071 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 ||||||||| ||||| ||| | ||||||||||||| ||||| || || |||| Sbjct 3072 CCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123 >seq11398 Length=8844 Score = 114 bits (126), Expect = 1e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||||||||||||||| | ||| ||||||| ||||||| || ||||| || |||||||| Sbjct 4345 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 4404 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 4405 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406137023797104