Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq27843 136 4e-27 >seq27843 Length=4971 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| |||||||||||||| || || || |||| |||||| ||||| Sbjct 2962 TACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTCGCCTTCCTCT 3021 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| || |||||| | |||||||| ||||| || ||||||| || |||||||||||| Sbjct 3022 CGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATCCCAGATCTTC 3081 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | ||||||||| |||| Sbjct 3082 ACCCCTTTCGCCGAGAGCTCTTTGG 3106 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| ||||||||| | ||||||||||||||||| || ||||||| || ||||| | Sbjct 3106 CCAAAGAGCTCTCGGCGAAAGGGGTGAAGATCTGGGATGCCAACGGGTCCCGGGACTTCC 3047 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | |||||| || ||| ||||| |||||| |||| || || || ||||||| Sbjct 3046 TGGACAACCTCGGGTTCACAGATCGAGAGGAAGGCGACCTGGGACCTGTGTATGGGTTCC 2987 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || ||||| Sbjct 2986 AGTGGAGGCACTTTGGTGCCGAGTA 2962 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || ||||| ||||| |||||||| | ||| Sbjct 1815 TGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGCACCCCGAGGCCC 1874 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || ||||| || || || ||||| || |||||||| || | |||||||| || Sbjct 1875 ATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACACACGTAGAACTGA 1934 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || |||| |||||| ||||| || ||||| Sbjct 1935 CACAGGGCGTGGCAGGGGGGCAGAGCCAT 1963 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| || ||||| |||||| |||| || || |||||||| | || |||||||| Sbjct 1963 ATGGCTCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGTGACGGCGAGCTGTCG 1904 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 || ||||| || || || ||||| || ||||| | |||||||| ||||| ||||| || Sbjct 1903 TGTCAGCTGTACCAGCGCTCGGGTGATATGGGCCTCGGGGTGCCTTTCAATATTGCCAGC 1844 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || ||||||||||| || Sbjct 1843 TATGCACTTCTTACCTACATGATCGCACA 1815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448066217960640