Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq27843 136 4e-27
>seq27843
Length=4971
Score = 136 bits (150), Expect = 4e-27
Identities = 117/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
||||| || |||||||| |||||||||||||| || || || |||| |||||| |||||
Sbjct 2962 TACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTCGCCTTCCTCT 3021
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
||| || |||||| | |||||||| ||||| || ||||||| || ||||||||||||
Sbjct 3022 CGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATCCCAGATCTTC 3081
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
||||| | ||||||||| ||||
Sbjct 3082 ACCCCTTTCGCCGAGAGCTCTTTGG 3106
Score = 136 bits (150), Expect = 4e-27
Identities = 117/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| ||||||||| | ||||||||||||||||| || ||||||| || ||||| |
Sbjct 3106 CCAAAGAGCTCTCGGCGAAAGGGGTGAAGATCTGGGATGCCAACGGGTCCCGGGACTTCC 3047
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
||||||| | |||||| || ||| ||||| |||||| |||| || || || |||||||
Sbjct 3046 TGGACAACCTCGGGTTCACAGATCGAGAGGAAGGCGACCTGGGACCTGTGTATGGGTTCC 2987
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| |||||||| || |||||
Sbjct 2986 AGTGGAGGCACTTTGGTGCCGAGTA 2962
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| || || || || || || ||||| ||||| |||||||| | |||
Sbjct 1815 TGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGCACCCCGAGGCCC 1874
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|| || ||||| || || || ||||| || |||||||| || | |||||||| ||
Sbjct 1875 ATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACACACGTAGAACTGA 1934
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768
|| |||| |||||| ||||| || |||||
Sbjct 1935 CACAGGGCGTGGCAGGGGGGCAGAGCCAT 1963
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636
||||| || ||||| |||||| |||| || || |||||||| | || ||||||||
Sbjct 1963 ATGGCTCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGTGACGGCGAGCTGTCG 1904
Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696
|| ||||| || || || ||||| || ||||| | |||||||| ||||| ||||| ||
Sbjct 1903 TGTCAGCTGTACCAGCGCTCGGGTGATATGGGCCTCGGGGTGCCTTTCAATATTGCCAGC 1844
Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725
|| || || || || ||||||||||| ||
Sbjct 1843 TATGCACTTCTTACCTACATGATCGCACA 1815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448066217960640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |