Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq27843 140 3e-28 seq11398 105 5e-18 >seq27843 Length=4971 Score = 140 bits (154), Expect = 3e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||| || || || ||| Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | |||||| ||||| ||||| ||||| ||||| | | Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| |||||||||| ||| ||||| || || || |||||| Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATG 1964 Score = 120 bits (132), Expect = 2e-22 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||||||||| ||||| ||||||||||| || || || | | ||| Sbjct 2974 AAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAC 3033 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | ||| |||||||| ||||||||||| ||||| ||| | Sbjct 3034 CCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATCCCAGATCTTCACCCCTTTCGCC 3093 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 ||||||||||||| ||||| || || |||| Sbjct 3094 GAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123 >seq11398 Length=8844 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | ||||| ||||||| || ||||| || |||||||| Sbjct 4345 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 4404 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 4405 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 4447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| || || ||||| ||||| | ||| || ||||||| |||| ||| |||||| | Sbjct 5854 AGTCTAACGGGGTGCCAGGGCAGGTTTCCATTCATCCCGATACCCAGGTCGGGACACACC 5913 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534 ||||||||||||||||||| | ||| ||| || Sbjct 5914 GCCACGATACCGTTCAGAACGCGGGACATTGT 5945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405989886608632