Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq27843 140 3e-28
seq11398 105 5e-18
>seq27843
Length=4971
Score = 140 bits (154), Expect = 3e-28
Identities = 128/162 (79%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| || || || | |||||||| || || || |||
Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|||||||| ||||| || || || | |||||| ||||| ||||| ||||| ||||| | |
Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875
||||| |||||||||| ||| ||||| || || || ||||||
Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATG 1964
Score = 120 bits (132), Expect = 2e-22
Identities = 118/151 (78%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| ||||||||||||||||| ||||| ||||||||||| || || || | | |||
Sbjct 2974 AAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAC 3033
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| ||||||| ||||| | ||| |||||||| ||||||||||| ||||| ||| |
Sbjct 3034 CCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATCCCAGATCTTCACCCCTTTCGCC 3093
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167
||||||||||||| ||||| || || ||||
Sbjct 3094 GAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123
>seq11398
Length=8844
Score = 105 bits (116), Expect = 5e-18
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348
||||||||||||||| | ||| | ||||| ||||||| || ||||| || ||||||||
Sbjct 4345 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 4404
Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||| ||||| || ||||| |||||||| |||||||| |||
Sbjct 4405 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 4447
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502
||||| || || ||||| ||||| | ||| || ||||||| |||| ||| |||||| |
Sbjct 5854 AGTCTAACGGGGTGCCAGGGCAGGTTTCCATTCATCCCGATACCCAGGTCGGGACACACC 5913
Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534
||||||||||||||||||| | ||| ||| ||
Sbjct 5914 GCCACGATACCGTTCAGAACGCGGGACATTGT 5945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405989886608632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |