Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq27843 143 2e-29 seq9979 129 4e-25 seq25665 123 2e-23 >seq27843 Length=4971 Score = 143 bits (158), Expect = 2e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| ||||| || ||||| | |||||| ||||||||||| ||||| || || | Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | ||||||||| || || ||||||||| || || |||| Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976 Score = 132 bits (146), Expect = 4e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||| || || || |||||||| |||||||| ||||| ||||||||||| Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || | | ||| || ||||||| ||||| | ||| |||||||| || Sbjct 3012 GCCTTCCTCTCGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATC 3071 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 ||||||||| ||||| ||| | ||||||||||||| ||||| || || |||| Sbjct 3072 CCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123 >seq9979 Length=15185 Score = 129 bits (142), Expect = 4e-25 Identities = 232/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 68985 CACAACAGCTTCCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAG 69044 ||||| | ||| | || || |||||| || ||| | || |||||| | | || Sbjct 5490 CACAAAACGTTCGCCTTAAACGGTCCAGCTGGTGCCATAATGGAGATAGGAGACCTGGAT 5431 Query 69045 GACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCC-- 69102 ||||| || | || | || || | |||||| || ||||| || || | ||| Sbjct 5430 GACACCATTTACAGAGGGAAGCATGATGAGGTGAATGGGTGGGGGAAATTCT---TCCTT 5374 Query 69103 CCACCGC-CGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGAC 69161 ||| | ||| | |||||||| |||| ||| ||| || | | || |||||| Sbjct 5373 CCAGAGATCGTCAACATGCAGGTTGTCGGCGTAGTGGAGGGGACCTCGTTCCCGTGTGAC 5314 Query 69162 CAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTG 69221 ||||| || |||||||||||||||||| ||| |||||| ||| || ||||| ||||| Sbjct 5313 CAGCTGGTTCTGATGACCTGCGAGGACAGAAAGATGTACGCCTACGATGGAGAGGAGCTT 5254 Query 69222 CATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTC 69281 |||| ||||||| || | || ||| | | | || || |||| ||||| |||| | Sbjct 5253 CATGAGGTGGCTTCATGCTTTGAGCAGCTATGTGCCGAGGGGATAGAGTATCCAGCATCC 5194 Query 69282 CAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 ||||||||| | || |||||||||||||||||| Sbjct 5193 AGGAGCTATTACGAAGGAGAGGCCTTCAAACATATG 5158 >seq25665 Length=5073 Score = 123 bits (136), Expect = 2e-23 Identities = 259/384 (67%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 68936 AGTTCCAGAGTATCTGGCATTAGTG--CGACAGAAGATGTCTGAATATAGTCACAACAGC 68993 || |||||| || |||||||| ||| |||| |||| | ||||| || | || Sbjct 3387 AGGTCCAGATTACCTGGCATTGGTGTTCGACTTTG--TGTCCGCATATAAACATGAGAGG 3444 Query 68994 TTCCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAG 69053 ||| || || | | ||||| || ||||| | || |||||| | |||| ||||| Sbjct 3445 TTCGACTTAAAGAATCCAGCTGGTGCCAAAGTAACGATAGGAGACCTTGATGACACCATT 3504 Query 69054 TATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTG 69113 || | | | || | |||||| ||||||||||| || || | |||| ||| Sbjct 3505 TACAGTGGGAAAAATGATGAGGTGAATGGATGGGGAAAATTCTACCTTCCCAAGATCGTA 3564 Query 69114 ACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTG 69173 | |||||||| | ||| ||| ||| || | | ||| ||||||| || || Sbjct 3565 AACATGCAGGTTGTAGGTGTAGTGGAGGGGACCTTGTGCTCCTGTCACCAGCTCGTTCTT 3624 Query 69174 ATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 |||||||| ||| || |||||||| | ||| || ||||| |||||||||| ||||||| Sbjct 3625 ATGACCTGTGAGAACAGAAAGGTGTATGCCTACGATGGAGAGGAGCTGCATGAGGTGGCT 3684 Query 69234 AACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTAT 69293 ||| | ||| | || | ||||| ||||| |||||| | | |||||| Sbjct 3685 TCAAATCTTGTGCAGCTACATAAAAAGGGAATCAAGTATCCAGCATTCAAAACCTATTAC 3744 Query 69294 CATGGGGAGGCCTTCAAACATATG 69317 | ||||||||||||||| ||||| Sbjct 3745 AAGGGGGAGGCCTTCAAAAATATG 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369349528044572