Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq27843 143 2e-29
seq9979 129 4e-25
seq25665 123 2e-23
>seq27843
Length=4971
Score = 143 bits (158), Expect = 2e-29
Identities = 136/174 (78%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| || || || | |||||||| || || || ||
Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|||||||| ||||| || ||||| | |||||| ||||||||||| ||||| || || |
Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381
||||| |||||||| | ||||||||| || || ||||||||| || || ||||
Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976
Score = 132 bits (146), Expect = 4e-26
Identities = 134/173 (77%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||||| |||||||| || || || |||||||| |||||||| ||||| |||||||||||
Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| || || | | ||| || ||||||| ||||| | ||| |||||||| ||
Sbjct 3012 GCCTTCCTCTCGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATC 3071
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661
||||||||| ||||| ||| | ||||||||||||| ||||| || || ||||
Sbjct 3072 CCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123
>seq9979
Length=15185
Score = 129 bits (142), Expect = 4e-25
Identities = 232/336 (69%), Gaps = 6/336 (2%)
Strand=Plus/Minus
Query 68985 CACAACAGCTTCCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAG 69044
||||| | ||| | || || |||||| || ||| | || |||||| | | ||
Sbjct 5490 CACAAAACGTTCGCCTTAAACGGTCCAGCTGGTGCCATAATGGAGATAGGAGACCTGGAT 5431
Query 69045 GACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCC-- 69102
||||| || | || | || || | |||||| || ||||| || || | |||
Sbjct 5430 GACACCATTTACAGAGGGAAGCATGATGAGGTGAATGGGTGGGGGAAATTCT---TCCTT 5374
Query 69103 CCACCGC-CGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGAC 69161
||| | ||| | |||||||| |||| ||| ||| || | | || ||||||
Sbjct 5373 CCAGAGATCGTCAACATGCAGGTTGTCGGCGTAGTGGAGGGGACCTCGTTCCCGTGTGAC 5314
Query 69162 CAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTG 69221
||||| || |||||||||||||||||| ||| |||||| ||| || ||||| |||||
Sbjct 5313 CAGCTGGTTCTGATGACCTGCGAGGACAGAAAGATGTACGCCTACGATGGAGAGGAGCTT 5254
Query 69222 CATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTC 69281
|||| ||||||| || | || ||| | | | || || |||| ||||| |||| |
Sbjct 5253 CATGAGGTGGCTTCATGCTTTGAGCAGCTATGTGCCGAGGGGATAGAGTATCCAGCATCC 5194
Query 69282 CAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317
||||||||| | || ||||||||||||||||||
Sbjct 5193 AGGAGCTATTACGAAGGAGAGGCCTTCAAACATATG 5158
>seq25665
Length=5073
Score = 123 bits (136), Expect = 2e-23
Identities = 259/384 (67%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 68936 AGTTCCAGAGTATCTGGCATTAGTG--CGACAGAAGATGTCTGAATATAGTCACAACAGC 68993
|| |||||| || |||||||| ||| |||| |||| | ||||| || | ||
Sbjct 3387 AGGTCCAGATTACCTGGCATTGGTGTTCGACTTTG--TGTCCGCATATAAACATGAGAGG 3444
Query 68994 TTCCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAG 69053
||| || || | | ||||| || ||||| | || |||||| | |||| |||||
Sbjct 3445 TTCGACTTAAAGAATCCAGCTGGTGCCAAAGTAACGATAGGAGACCTTGATGACACCATT 3504
Query 69054 TATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTG 69113
|| | | | || | |||||| ||||||||||| || || | |||| |||
Sbjct 3505 TACAGTGGGAAAAATGATGAGGTGAATGGATGGGGAAAATTCTACCTTCCCAAGATCGTA 3564
Query 69114 ACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTG 69173
| |||||||| | ||| ||| ||| || | | ||| ||||||| || ||
Sbjct 3565 AACATGCAGGTTGTAGGTGTAGTGGAGGGGACCTTGTGCTCCTGTCACCAGCTCGTTCTT 3624
Query 69174 ATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233
|||||||| ||| || |||||||| | ||| || ||||| |||||||||| |||||||
Sbjct 3625 ATGACCTGTGAGAACAGAAAGGTGTATGCCTACGATGGAGAGGAGCTGCATGAGGTGGCT 3684
Query 69234 AACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTAT 69293
||| | ||| | || | ||||| ||||| |||||| | | ||||||
Sbjct 3685 TCAAATCTTGTGCAGCTACATAAAAAGGGAATCAAGTATCCAGCATTCAAAACCTATTAC 3744
Query 69294 CATGGGGAGGCCTTCAAACATATG 69317
| ||||||||||||||| |||||
Sbjct 3745 AAGGGGGAGGCCTTCAAAAATATG 3768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369349528044572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |