Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15996 363 2e-95 seq95 93.3 6e-14 >seq15996 Length=6831 Score = 363 bits (402), Expect = 2e-95 Identities = 1250/1943 (64%), Gaps = 21/1943 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| | ||||| || | || | || || |||||||| Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 2240 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCT 2181 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | || || ||||| |||||||| | || || Sbjct 2180 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 2121 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || || | | || || || || || | || || || || Sbjct 2120 TAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 2061 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 || | | || || || || ||||| | ||||| || || || || || || || || Sbjct 2060 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGG 2001 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||||| || || || || ||||| || || Sbjct 2000 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTC 1941 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | ||| |||| | ||||| ||| | |||||| ||| ||||| | | || Sbjct 1940 AAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGCTCA 1881 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || || || || || || |||||||| || |||||||||| | Sbjct 1880 GGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCG 1821 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 ||| || | | ||| || ||||| || || || | ||||| || || ||||| || Sbjct 1820 CTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGC 1761 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| |||| || | ||| || || || | |||| || || ||||| || Sbjct 1760 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTC 1701 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTGTATCGCT 76490 || || |||||||| | | ||| || || || ||| || | | ||| | | Sbjct 1700 TGGGACTCGATAATGGCGTGCCACAC--CTGCTGAGCCTTCACCACGCGCTTGACCCTCC 1643 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 ||| | ||||| || || | | || || || || ||||| || |||| | Sbjct 1642 CCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 1583 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | || || || ||||||||||||| ||||| || | || || | ||||| | Sbjct 1582 CGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGA 1523 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTG 76670 | || || || ||||| | || || || |||| || || | || || ||||| | Sbjct 1522 ACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGG 1463 Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 | ||||| || || || ||||| || | | || | ||||| || || || || || | Sbjct 1462 TGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGG 1403 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | | || || | || || |||||||| || | || | || ||||| || || | Sbjct 1402 CAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGA 1343 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCAC 76850 |||||| ||| || | | ||||| || | || || || || | || || || || Sbjct 1342 CTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCG 1283 Query 76851 ATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 | || || || | | | ||| ||||| || ||| || ||||| || |||| Sbjct 1282 TCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCAC 1223 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | |||| ||||| || ||||| || || || || ||| ||||| || || || | Sbjct 1222 ACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 1163 Query 76971 AGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGA 77026 |||| |||| || || || ||||| || || || | || || || || || Sbjct 1162 AGCTGGACAGCTGTGGCCTGTTG----GTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGG 1107 Query 77027 GTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGA 77086 |||||||| || || || || || ||||| || ||||| |||| || ||| || Sbjct 1106 GTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTG 1047 Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || || || |||| || | ||| | ||| ||||| || || || | || || Sbjct 1046 TGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTG 987 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 77206 || ||||||| ||| || |||| || || || || || ||||||| || || || Sbjct 986 ATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927 Query 77207 CTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACA 77266 | ||| | || || | || || || ||| || | | | ||| || || || Sbjct 926 CGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTC---GAGC 870 Query 77267 GT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAG 77323 || | || || || ||||| | || ||| || || | ||||| | | | Sbjct 869 GTCTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGG 810 Query 77324 TCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATT 77383 || ||||| ||||| || || | || || || || ||||| || || || ||||| || Sbjct 809 TCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATC 750 Query 77384 CTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCC 77443 | ||||| || || || ||||| || |||| || ||| |||||| || || ||||| Sbjct 749 CGTGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCG 690 Query 77444 GCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 77503 || | || || | || | || || || ||| | || | || || || || ||||| Sbjct 689 GCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATC 630 Query 77504 GCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGA 77563 | || | | | ||||| ||||| || | ||||| || || || | || || ||| Sbjct 629 GTAATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGA 570 Query 77564 GATGTGATTTTATCAAACATGAC 77586 || ||||||||||| |||||||| Sbjct 569 GACGTGATTTTATCGAACATGAC 547 >seq95 Length=91801 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||||| || | || || |||||||||||||| | ||| ||| Sbjct 11836 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 11895 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||| | || || ||||| || || || |||||||| || || || || || || || Sbjct 11896 AGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAATATTCCCTCCACTGCTGCAAAAGCC 11955 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||| || Sbjct 11956 ACAATTCGCTCCCC 11969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712622384259840