Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq471 140 7e-28
seq18046 93.3 9e-14
seq730 89.7 1e-12
seq16167 87.8 4e-12
seq21676 86.0 1e-11
>seq471
Length=23154
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || | |||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 16868 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 16809
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| || || || ||||| ||||| ||||||| | || ||||| ||
Sbjct 16808 AGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 16749
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| || |||||||| ||||| ||| | ||||| ||||| | || ||
Sbjct 16748 ATTCCCTCCTTATCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 16689
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| |||||||| || | ||||| || || |||||||| ||
Sbjct 16688 TCCAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATCTT 16639
>seq18046
Length=8152
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 4232 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 4174
>seq730
Length=28029
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 6219 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6161
>seq16167
Length=6939
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||| |||||||| ||||||||||| || || | ||||||||||| | || || ||
Sbjct 140 ACCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGCTCAACCTC 81
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| ||||| ||||| || ||||| ||||| ||||| |||||||| ||
Sbjct 80 AAGGGTGATGGTCTTCCCTGTCAACGTCTTCACGAAGATCTGCATGTT 33
>seq21676
Length=13877
Score = 86.0 bits (94), Expect = 1e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 282923 GTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTG 282982
|||||| | || |||||||||||||| || || || || |||||||||| | || ||
Sbjct 1 GTAGTCGGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTG 60
Query 282983 GTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039
||| ||||| || |||||||| |||||||| || || ||| | || || |||||
Sbjct 61 ATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC 117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046269641953848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |