Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq289 176 6e-39
seq27640 131 2e-25
seq4092 102 1e-16
>seq289
Length=55552
Score = 176 bits (194), Expect = 6e-39
Identities = 205/277 (74%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368
|||| |||||| | ||||| || ||| | | ||| | ||||| || |||| |||
Sbjct 25496 CCCTGGACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACAATGTCGAAGCCC 25437
Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428
||| || ||||| |||||||||||||||||| | |||||||||||| ||| ||||
Sbjct 25436 ACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCATT 25377
Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488
| ||| ||||||||| | || ||||||| ||| | || |||| || |||||||| ||
Sbjct 25376 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATCGTCTCCCCAAAGATGGCATTA 25317
Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548
|| | ||| || |||||||| | ||| | ||| ||||||||||| |||| || ||| ||
Sbjct 25316 GGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGCTCCACAGCGTCGATGTGTCCATAC 25257
Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
| || ||| | || || || || ||||||||||
Sbjct 25256 ATCTCCTCGAGCACTGCGGCCATTTCTTTTTCTCCTG 25220
Score = 109 bits (120), Expect = 8e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294
||||| | ||||| || | |||||||| || ||||| ||| || || || |
Sbjct 23695 CCGATCAGAATGAGCCGTGAAGTCTGGAAAAGCCTTTCGTCGTCCCAGTCAGGGTGGACC 23636
Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354
| ||||| || || ||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 23635 TCCTTCAGCACTTCACACACCCGGTTGTGTTCCCGTAGCCAGATCGTGGCGTACATCATC 23576
Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392
|| || || |||||||| || ||||| || || |||||
Sbjct 23575 AGACCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGC 23538
Score = 86.0 bits (94), Expect = 9e-12
Identities = 199/295 (67%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| || || || || || || | ||||| || || || | | | |||||||| ||
Sbjct 24351 CTTACCCGTCCTGCAATCTGATTGGAAAACGACTCCACAAGGTTGCTGATGCCGTGC-TC 24293
Query 9004 A-TGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTC 9062
| | | || || |||||| ||| || | ||||| || | | | | ||||| |
Sbjct 24292 AGTCACTACAGAGTTGTTGAAGATAAACTGTTTGTAGTTGTAGTCTTTCTCCTCAATGTG 24233
Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122
|| ||| ||||| || | |||||||| |||| |||| |||||||| || ||
Sbjct 24232 GAAGCTATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCGGATGCAATGCG 24173
Query 9123 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181
|| ||||||||||| || | || ||||| ||||| | |||| |||| || |
Sbjct 24172 GTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGT 24114
Query 9182 GGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236
||||||||| || ||||| ||||| | | | | ||| |||||||| || ||
Sbjct 24113 TGTAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 24059
>seq27640
Length=19633
Score = 131 bits (144), Expect = 2e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410
|||||||| | ||| || ||||| || |||||||| |||||||||||| | ||||||
Sbjct 8476 TTGACGATACTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAG 8535
Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470
|||||| ||| ||| |||||||| |||||||| |||||||||| ||| | || |||
Sbjct 8536 CAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTC 8595
Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530
||||| || ||| | || || || | |||||| | || | || | ||| | ||||| |
Sbjct 8596 TCACCAAATATGCCATTAGGGCGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAA 8655
Query 8531 GCCTC 8535
|| ||
Sbjct 8656 GCATC 8660
Score = 127 bits (140), Expect = 3e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||| |||| || || || || | ||| | | |||||||| |
Sbjct 17672 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAGAGTAGACGTTTTGACGATATTG 17731
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| || ||||| || |||||||| |||||||||||| | |||||||||||| |||
Sbjct 17732 AAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 17791
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
||| |||||||| |||||||| |||||||| | ||| | || |||||||| || |||
Sbjct 17792 CCCAGCAGGCCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATACTCTCACCAAATATG 17851
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| | | ||| | || |||| || || |||| ||| | ||||| ||| || | |||
Sbjct 17852 CTGCTAGAACGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCCAAAGCATCTATGTCA 17911
Query 8543 CCGTAAAG 8550
|| || ||
Sbjct 17912 CCATAGAG 17919
Score = 113 bits (124), Expect = 6e-20
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||||||| |||| | |||||||| || ||||| || ||| ||||||
Sbjct 9570 TCACCAATAATGATAAGTCTGGCAGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 9629
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| ||||| | || ||||| ||||| || || || ||||| || |||||||||||
Sbjct 9630 TCTGACTTCAGGATGTCACACACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATG 9689
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||| || |||| | |||||| ||| ||||| | | |||||||| | | | ||
Sbjct 9690 GTGAGACCCGGTAGGATGCCAAATATCTCCTGACCAATAACCAGACGCTTCTCTGGAGGG 9749
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471
|| | |||||| | ||||||||| |||| || || | || || ||||| |||
Sbjct 9750 ACACCTTCAGGATACACCATGTGCACAGGGACCTCAGATACTGTTGGAGGGTACATCTCA 9809
Query 9472 CC 9473
||
Sbjct 9810 CC 9811
>seq4092
Length=119833
Score = 102 bits (112), Expect = 1e-16
Identities = 190/279 (68%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 8271 GCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTA 8330
|||||||| | || |||| || || | | |||||| |||| ||| |||||| |
Sbjct 97976 GCTCCTCAGCTGGTACTCTAAATGCCACATAAGGACACGACTTGGTGTTTAGACAGACCA 97917
Query 8331 GAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGG 8390
| || | || ||| || || || | || || || | || |||||||| ||||
Sbjct 97916 GCTTCTTTAGCGTGGCGGAGTTCACTATGTCAAAGCCGACTTTGCCACCGAAGGTACTGG 97857
Query 8391 GCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAG 8450
|||||||||| | || || || || ||| ||| ||||||||| |||||||| || |
Sbjct 97856 GCTTCCAGTATTCAGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGG 97797
Query 8451 CCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510
| |||| ||| | |||||||| || || |||| | || | | || |||| || |
Sbjct 97796 CACCCATCTCCACCATGCTCTCTCCAAATATGGTGCCGGCTCTTGTTTTCTCCAACATCA 97737
Query 8511 ATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAA 8549
|||| | || | ||| | ||| || | ||| |||||||
Sbjct 97736 ATCCAGGATAAAACTCAAGAGCTTCAATGTCACCGTAAA 97698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716563058868480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |