Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq289 176 6e-39 seq27640 131 2e-25 seq4092 102 1e-16 >seq289 Length=55552 Score = 176 bits (194), Expect = 6e-39 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| |||||| | ||||| || ||| | | ||| | ||||| || |||| ||| Sbjct 25496 CCCTGGACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACAATGTCGAAGCCC 25437 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| |||||||||||||||||| | |||||||||||| ||| |||| Sbjct 25436 ACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCATT 25377 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | || |||| || |||||||| || Sbjct 25376 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATCGTCTCCCCAAAGATGGCATTA 25317 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || | ||| || |||||||| | ||| | ||| ||||||||||| |||| || ||| || Sbjct 25316 GGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGCTCCACAGCGTCGATGTGTCCATAC 25257 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || ||| | || || || || |||||||||| Sbjct 25256 ATCTCCTCGAGCACTGCGGCCATTTCTTTTTCTCCTG 25220 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | ||||| || | |||||||| || ||||| ||| || || || | Sbjct 23695 CCGATCAGAATGAGCCGTGAAGTCTGGAAAAGCCTTTCGTCGTCCCAGTCAGGGTGGACC 23636 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||| || || ||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 23635 TCCTTCAGCACTTCACACACCCGGTTGTGTTCCCGTAGCCAGATCGTGGCGTACATCATC 23576 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || || |||||||| || ||||| || || ||||| Sbjct 23575 AGACCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGC 23538 Score = 86.0 bits (94), Expect = 9e-12 Identities = 199/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || | ||||| || || || | | | |||||||| || Sbjct 24351 CTTACCCGTCCTGCAATCTGATTGGAAAACGACTCCACAAGGTTGCTGATGCCGTGC-TC 24293 Query 9004 A-TGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTC 9062 | | | || || |||||| ||| || | ||||| || | | | | ||||| | Sbjct 24292 AGTCACTACAGAGTTGTTGAAGATAAACTGTTTGTAGTTGTAGTCTTTCTCCTCAATGTG 24233 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 || ||| ||||| || | |||||||| |||| |||| |||||||| || || Sbjct 24232 GAAGCTATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCGGATGCAATGCG 24173 Query 9123 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 || ||||||||||| || | || ||||| ||||| | |||| |||| || | Sbjct 24172 GTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGT 24114 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 ||||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 24113 TGTAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 24059 >seq27640 Length=19633 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||||||| | ||| || ||||| || |||||||| |||||||||||| | |||||| Sbjct 8476 TTGACGATACTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAG 8535 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| ||| |||||||| |||||||| |||||||||| ||| | || ||| Sbjct 8536 CAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTC 8595 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 ||||| || ||| | || || || | |||||| | || | || | ||| | ||||| | Sbjct 8596 TCACCAAATATGCCATTAGGGCGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAA 8655 Query 8531 GCCTC 8535 || || Sbjct 8656 GCATC 8660 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| | | |||||||| | Sbjct 17672 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAGAGTAGACGTTTTGACGATATTG 17731 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || |||||||| |||||||||||| | |||||||||||| ||| Sbjct 17732 AAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 17791 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| |||||||| |||||||| |||||||| | ||| | || |||||||| || ||| Sbjct 17792 CCCAGCAGGCCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATACTCTCACCAAATATG 17851 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | | ||| | || |||| || || |||| ||| | ||||| ||| || | ||| Sbjct 17852 CTGCTAGAACGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCCAAAGCATCTATGTCA 17911 Query 8543 CCGTAAAG 8550 || || || Sbjct 17912 CCATAGAG 17919 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||||||| |||| | |||||||| || ||||| || ||| |||||| Sbjct 9570 TCACCAATAATGATAAGTCTGGCAGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 9629 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || ||||| ||||| || || || ||||| || ||||||||||| Sbjct 9630 TCTGACTTCAGGATGTCACACACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATG 9689 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || |||| | |||||| ||| ||||| | | |||||||| | | | || Sbjct 9690 GTGAGACCCGGTAGGATGCCAAATATCTCCTGACCAATAACCAGACGCTTCTCTGGAGGG 9749 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | |||||| | ||||||||| |||| || || | || || ||||| ||| Sbjct 9750 ACACCTTCAGGATACACCATGTGCACAGGGACCTCAGATACTGTTGGAGGGTACATCTCA 9809 Query 9472 CC 9473 || Sbjct 9810 CC 9811 >seq4092 Length=119833 Score = 102 bits (112), Expect = 1e-16 Identities = 190/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 8271 GCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTA 8330 |||||||| | || |||| || || | | |||||| |||| ||| |||||| | Sbjct 97976 GCTCCTCAGCTGGTACTCTAAATGCCACATAAGGACACGACTTGGTGTTTAGACAGACCA 97917 Query 8331 GAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGG 8390 | || | || ||| || || || | || || || | || |||||||| |||| Sbjct 97916 GCTTCTTTAGCGTGGCGGAGTTCACTATGTCAAAGCCGACTTTGCCACCGAAGGTACTGG 97857 Query 8391 GCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAG 8450 |||||||||| | || || || || ||| ||| ||||||||| |||||||| || | Sbjct 97856 GCTTCCAGTATTCAGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGG 97797 Query 8451 CCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 | |||| ||| | |||||||| || || |||| | || | | || |||| || | Sbjct 97796 CACCCATCTCCACCATGCTCTCTCCAAATATGGTGCCGGCTCTTGTTTTCTCCAACATCA 97737 Query 8511 ATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAA 8549 |||| | || | ||| | ||| || | ||| ||||||| Sbjct 97736 ATCCAGGATAAAACTCAAGAGCTTCAATGTCACCGTAAA 97698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716563058868480