Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq92 140 3e-28 seq65 134 1e-26 seq29 132 5e-26 seq13 104 2e-17 >seq92 Length=2575742 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || ||| Sbjct 2564198 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2564139 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || || ||||| || | ||||| Sbjct 2564138 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCACCTGACCA 2564080 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 2564079 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 2564020 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || ||||| || |||| | ||||| ||| Sbjct 2564019 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 2563971 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 2563970 ATGCAGATCTTGGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 2563911 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | || || || ||||| || | |||||| Sbjct 2563910 GACACCATTGAGAACATCAAGGCTAAAATCCAGGATAAGGAAGGCATTCCACCTGACCAG 2563851 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| | ||||| |||||| | || | ||||||||| ||||||||| Sbjct 2563850 CAGAGGCTGATCTTTGATGGCAAGCAGCTGAAAGATGGCCGCACCCTCTCTGACTACAAC 2563791 Query 40870 ATCCAGAAGGAGGCCACGCT 40889 |||||||| ||| |||| || Sbjct 2563790 ATCCAGAATGAGTCCACCCT 2563771 >seq65 Length=3759856 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| || || || || |||||||| |||| || || | Sbjct 3001350 AAACATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGCC 3001409 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| ||||| | || || || ||||| ||| | || Sbjct 3001410 CAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGA 3001469 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 3001470 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTA 3001529 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3001530 CAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCAGGGGTGGC 3001581 >seq29 Length=6224470 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| |||||| |||||| Sbjct 1440890 GGGGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 1440949 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 1440950 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 1441009 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 1441010 ATCAGCAGAGACGAGG 1441025 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| |||||| |||||| Sbjct 1451537 GGGGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 1451478 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 1451477 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 1451418 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 1451417 ATCAGCAGAGACGAGG 1451402 Score = 123 bits (136), Expect = 3e-23 Identities = 102/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 1440279 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 1440337 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1440338 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1440397 Query 116804 GT 116805 || Sbjct 1440398 GT 1440399 Score = 123 bits (136), Expect = 3e-23 Identities = 102/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 1452148 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 1452090 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1452089 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1452030 Query 116804 GT 116805 || Sbjct 1452029 GT 1452028 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| ||||||||| | ||||| ||||| |||||||| ||||| Sbjct 1451947 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCA 1451888 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| | || || |||||||||||| Sbjct 1451887 GATCGCCATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTGATCGACACGTAC 1451833 Score = 107 bits (118), Expect = 2e-18 Identities = 95/117 (81%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| ||||||||| | ||||| ||||| |||||||| ||||| Sbjct 1440480 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCA 1440539 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 1440540 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 1440594 >seq13 Length=10688992 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || |||||||| | ||||| || ||||| ||||| || |||| ||| Sbjct 6293250 GAACCTCTGCTCCGAGAGAACCCAAGGCGGTTTGTCATTTTTCCCATCCAGTACCGAGAC 6293309 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 6293310 ATCTGGAAGATGTACAAACAGGCCCAGGCCTCTTTCTGGACCGTGGAGGAGGTGG 6293364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515160600256240