Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq38 114 1e-20 seq92 95.1 1e-14 >seq38 Length=4945250 Score = 114 bits (126), Expect = 1e-20 Identities = 480/743 (65%), Gaps = 26/743 (3%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| | |||||||| || | ||| || || | | || | || ||| | | Sbjct 1347707 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 1347648 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 |||| || ||||||||||| || ||||| || || | ||||||||||| | || Sbjct 1347647 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACA 1347588 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 || || ||| || ||||| | ||| || || || || |||||||||| Sbjct 1347587 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 1347528 Query 133402 ACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATA 133460 |||| | ||||| || | ||||| | | | || || | || | ||| Sbjct 1347527 ACAGGTCCGTTGG---------CGTC-TTCTC--CCACAT-GTCGT---ACTGGAGAATG 1347484 Query 133461 CCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCG 133520 ||| | |||||||| | | ||||| ||||||| ||| |||||||||| Sbjct 1347483 CCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCG 1347424 Query 133521 CAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCT 133579 ||||| || |||||||||||| | || || || || ||| || || ||||| | | | Sbjct 1347423 CAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGAT-GTTGA-GCAGTT 1347366 Query 133580 G-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 | || ||| ||| || ||| ||| || | ||| | || || || ||||| ||||| Sbjct 1347365 GAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGG 1347307 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697 | |||| || || || | || | || |||| | || || || ||| Sbjct 1347306 ACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAG 1347247 Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757 | ||||| |||||| | |||||| | || | ||| || | ||| |||| | || Sbjct 1347246 TAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAAT 1347187 Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817 | ||||| | ||| || | || |||| || |||||| || | | ||| Sbjct 1347186 TTTTTAAAGTCATAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGCGACAGAGGCC 1347130 Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTG 133877 ||||| ||||| ||| ||||| || | |||| |||||| || | ||| |||||| Sbjct 1347129 AGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTG 1347070 Query 133878 CTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTAT 133937 ||||| ||||||||||||| ||| | || ||||| | ||||| ||| ||||| Sbjct 1347069 CTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAG 1347010 Query 133938 AGCATGTACGGCCCGCCGGTTTC 133960 | |||||||||| |||||||| Sbjct 1347009 ACCATGTACGGCGTCCCGGTTTC 1346987 >seq92 Length=2575742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||| || | Sbjct 2563991 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 2564050 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||| || || || ||||| ||||| || | Sbjct 2564051 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGA 2564110 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || | |||||| || ||| ||||| | ||| | || |||| Sbjct 2564111 TTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 2564170 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || || || ||||| |||||||||||| Sbjct 2564171 CAGTGAGGGTCTTCACAAAGATCTGCATGGCT 2564202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433782290784508