Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq38 459 2e-124 seq89 123 2e-23 seq65 96.9 3e-15 >seq38 Length=4945250 Score = 459 bits (508), Expect = 2e-124 Identities = 962/1425 (68%), Gaps = 41/1425 (3%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||||| || | | |||| ||||||| ||| || |||| || | |||||| Sbjct 1347750 TCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAAC 1347691 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || ||||| ||| |||||| |||| | | |||| || || ||| Sbjct 1347690 TCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTG 1347631 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| | || ||| || ||| ||| Sbjct 1347630 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTC 1347571 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | || || ||| |||| | |||||||||||| || | |||||| Sbjct 1347570 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTC 1347511 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| |||| |||| |||||||||||| Sbjct 1347510 ---TTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTC 1347454 Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 || || || | | || ||||| || ||||||||||| ||||| ||| | ||||| || Sbjct 1347453 TCATA-GGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACAT 1347395 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 ||||| ||||| | | ||| || || || ||| |||||| | || ||| Sbjct 1347394 TGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGG---GGCTTTCAAAGGGATAACG 1347338 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||| || || |||| ||||| || || || || ||||| | || || Sbjct 1347337 CATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCAT 1347278 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 |||||| | || || || || || | || ||||| |||||||||| Sbjct 1347277 GTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTT 1347218 Query 22945 TCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-- 22999 ||| ||||| ||| || | | |||||| ||| | ||| | Sbjct 1347217 CCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAA--GTCCGCTCA 1347163 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || || |||||| |||| ||||| |||||||| || ||||||||||| ||| Sbjct 1347162 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 1347103 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || ||||| || || || ||||| ||||| || ||||||| ||| | Sbjct 1347102 CTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 1347043 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || | ||||| | ||| ||||||| |||||||||||| || || || | Sbjct 1347042 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 1346983 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTG 23236 |||||||||||||| || ||| | |||||| | ||||| ||| ||| Sbjct 1346982 TGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTC 1346926 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || ||| || | ||| | | ||||| || | || | || || |||| Sbjct 1346925 CCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGC 1346866 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||||||||| || ||| || || || || || || |||| Sbjct 1346865 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATG 1346806 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| || |||||||||| || | ||| ||| |||||| || || Sbjct 1346805 AAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCC 1346746 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||||| |||| |||| |||||| ||||| || ||||| ||||| ||||| | | Sbjct 1346745 GTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATG 1346686 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| ||||| || ||||| |||||||| || ||||| || ||||||||||| Sbjct 1346685 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAA 1346626 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAA 23593 || || | ||| || ||||| |||||||| |||| ||| || | ||| Sbjct 1346625 ACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC--- 1346569 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | | || || | | || | || || |||||| | ||||| || || | Sbjct 1346568 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGG 1346509 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 ||||| || ||||| ||||||||||| |||||||||||||| || || | |||| || | Sbjct 1346508 GCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 1346449 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || |||| |||| || || | || ||| || |||||| |||||| Sbjct 1346448 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 1346389 Query 23774 GTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGC 23814 || || ||| ||| |||| || ||||| || |||||||| Sbjct 1346388 GTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGC 1346348 >seq89 Length=2585884 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||||||||| || ||||| | ||| | ||||| || || || | Sbjct 777943 TTTCCACTCGCTTCATAAAAAGATCTGGGATCCACAAGGCGAAAAACAGGTCCCGCGCCC 778002 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| ||||| |||||||| || ||||| || | ||||| Sbjct 778003 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAACTCCAAAAACTCAAACACATCAGAATGCC 778062 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||||||||| | || ||||| || || |||| Sbjct 778063 ACGGCTCGAGGTACATAGCGAACGCCCCAGGCCTCT 778098 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||||||| || || || || |||||||| | || || || Sbjct 777449 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 777508 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||| || || |||| |||||| | ||||||||| | |||||| || || Sbjct 777509 GCCCAGATTTTGCTGATTACTCTTTCTATTGCAGGCATCCTTGTAAACCATGTATGGTGT 777568 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||||||||| ||||| || ||||| Sbjct 777569 ACCAGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 777606 >seq65 Length=3759856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || || || || || || || || || || ||||| |||| ||||| || Sbjct 3001350 AAACATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGCC 3001409 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | || | ||||| | ||| ||| ||||||||| | || ||||| Sbjct 3001410 CAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGA 3001469 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || || |||||||| ||| ||||||| | || || ||| || Sbjct 3001470 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTA 3001529 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || ||||| || || || | || ||||| || Sbjct 3001530 CAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCAGGGGTGG 3001580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445715699644080