Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38 403 2e-107 seq89 100 4e-16 seq29 86.0 8e-12 >seq38 Length=4945250 Score = 403 bits (446), Expect = 2e-107 Identities = 1268/1953 (65%), Gaps = 41/1953 (2%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| |||||||| | ||||| || | || | || || || ||||| Sbjct 1347762 TTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 1347703 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || || || || | || | || ||||| || || || || || | || Sbjct 1347702 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 1347643 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 1347642 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGC 1347583 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 1347582 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1347523 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 |||| || | | ||| || || ||||| || ||||| | Sbjct 1347522 TCCGTTGGCGTCTTCTCCCACATGTCG-------TACTGGAGAATGCCCTTACTCACCGG 1347470 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| ||| | || || ||||| | || || | || || | || ||||| || || Sbjct 1347469 CGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAA 1347410 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || | ||||| || || |||||||||| | || || ||| || || ||||| || Sbjct 1347409 AGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTC 1347350 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| |||||| | || || || || || || ||||| || || || || || || || Sbjct 1347349 AAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 1347290 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | | | || || | |||||| | || || || || || || |||| Sbjct 1347289 CCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 1347230 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT 62915 || || | || ||||||||||||||| ||| || | || ||| ||| ||| | Sbjct 1347229 CTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAA 1347172 Query 62916 ---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||| || | || ||||||| | || ||||| |||||||| || || || ||| Sbjct 1347171 GTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACC 1347112 Query 62973 TCATTAGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATAG 63027 || | | | | || |||| | || || |||||||| || || |||||||| | Sbjct 1347111 TCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGG 1347057 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | ||| || || || ||||| |||| || ||||| || || | ||| | || | Sbjct 1347056 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 1346997 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 63146 | || ||||| |||| || || || || || | ||| | | || ||||||| | | | Sbjct 1346996 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACA 1346938 Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 || |||| || || || ||| || || | | ||| ||||| || ||||| Sbjct 1346937 CGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 1346878 Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 | |||| | || || || |||||||||||| ||||| ||| || | || | Sbjct 1346877 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCC 1346818 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATG 63325 || || ||||| ||||| ||||| ||||| || || || || || || || | || || Sbjct 1346817 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAG-TCCCTGGCTCGCTG 1346759 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| ||||| || ||||| || || || || || | | | ||| | ||||| || Sbjct 1346758 CTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGG 1346699 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 |||| ||| ||||| | | || || | |||||| || |||||||| | || | || Sbjct 1346698 CTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGC 1346639 Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505 ||||| || ||||| ||||||||||| | | ||||| || || ||||| |||| Sbjct 1346638 TGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGC 1346579 Query 63506 GATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63565 ||| |||| || ||| | ||| || | || | || || || || || ||| Sbjct 1346578 GATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTT 1346519 Query 63566 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT 63625 ||||| | ||||| | || | |||||| ||||| || || ||||| ||||| |||| Sbjct 1346518 GGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCAT 1346459 Query 63626 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 | || || || ||||| |||| || | | | ||||| ||||| || | ||| || Sbjct 1346458 GGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGG 1346399 Query 63686 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63745 || ||||| || ||||| || || || || || ||||| ||||| || ||| | || Sbjct 1346398 GGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGAT 1346339 Query 63746 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 ||| ||| ||||| || || || | ||| | ||||||||| || | ||| | | Sbjct 1346338 ATCTGTCCCATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTAC 1346279 Query 63806 TTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 |||| || || || | || |||||| |||| ||| || || ||||| ||||||| Sbjct 1346278 TTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTA 1346219 Query 63866 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTAT 63925 || || |||| || || || || |||| || || || || | | ||| || Sbjct 1346218 GGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAAT 1346159 Query 63926 ATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAG 63983 || | || | ||||| || | || || | | || | || || | ||| Sbjct 1346158 GTCGAGTGTGTCTTTCGAAATCATGGACGA--GTGGCGTTTGTTCAGGGGGTTGATGTAG 1346101 Query 63984 TTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGAT 64043 ||| | | |||||||| ||||| || || | || || || || ||||| || || || Sbjct 1346100 TTGTACAGGTCCTCCATGACTTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAG 1346041 Query 64044 ATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 64103 | ||| || | ||||| || ||||| || || || | | || || |||||| || Sbjct 1346040 ACGGCGATGCGTGCGGCGAGGATGGCGTAGTCAGGGTACTTGGTTGTGAGAGTGGCAGCA 1345981 Query 64104 ATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATA 64163 || || || ||||| ||||| | || || || || || || | || | || || || Sbjct 1345980 ATCTCCGCCGCCAGCGTGTCAAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATG 1345921 Query 64164 ACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTT 64223 |||||||| | || | || || | | ||| |||| | || ||||| || || Sbjct 1345920 ACCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTT 1345862 Query 64224 CT-AATACGAGACGTGATTTTATCAAACATGAC 64255 || || ||||| |||||||| || |||||||| Sbjct 1345861 CTGGATGCGAGATGTGATTTTGTCGAACATGAC 1345829 >seq89 Length=2585884 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| ||||| || | ||||| || || | |||||| |||||||||||| | Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 777596 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 777597 GCGTACCA 777604 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 778616 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 778675 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 778676 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 778735 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| |||| ||| ||| Sbjct 778736 ATGTGCTGGGGTCGCTCAGCAA 778757 >seq29 Length=6224470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 1451834 TACGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGAAAA 1451893 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| | ||||| || | ||||||||| Sbjct 1451894 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 1451928 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| || || || ||||| || ||||| |||||||| Sbjct 1440593 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGAAAA 1440534 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| | ||||| || | ||||||||| Sbjct 1440533 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 1440499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629745966120720