Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq38 414 1e-110 seq89 105 9e-18 >seq38 Length=4945250 Score = 414 bits (458), Expect = 1e-110 Identities = 1265/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Minus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 1347762 TTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 1347703 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 1347702 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 1347643 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 1347642 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGC 1347583 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 1347582 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1347523 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 65415 |||| || | | | || ||||| || ||||| | ||| | Sbjct 1347522 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 1347465 Query 65416 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 65475 || | || || || || | || || | || || || || ||||| || || || Sbjct 1347464 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 1347405 Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 1347404 CATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 1347345 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 1347344 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 1347285 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 1347284 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 1347225 Query 65656 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 65710 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 1347224 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 1347167 Query 65711 CTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 65770 |||| | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 1347166 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 1347107 Query 65771 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | | | || |||| | || || |||||||| || || ||||||||||| || Sbjct 1347106 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCC 1347052 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 1347051 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 1346992 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 65944 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 1346991 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 1346933 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 ||| || || || ||| || || | | ||| ||||| || ||||| | Sbjct 1346932 CACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 1346873 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 66064 |||| || || || || |||||||||||| ||||| ||| || | || ||| || Sbjct 1346872 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCG 1346813 Query 66065 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 1346812 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTC 1346753 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 ||||| || ||||| || || || || || | | | ||| | ||||| || |||| Sbjct 1346752 CTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAG 1346693 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 ||| ||||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 1346692 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 1346633 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| || Sbjct 1346632 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 1346573 Query 66305 GCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 ||| || | | | ||| || | || | || || || || || ||| ||||| Sbjct 1346572 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGAT 1346513 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 | ||||| | || | ||| || ||||| ||||| || || |||||| ||||| || Sbjct 1346512 GAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 1346453 Query 66425 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 66484 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 1346452 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 1346393 Query 66485 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 66544 ||| || ||||| || || || || || ||||| ||||| || ||| | ||||| Sbjct 1346392 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGT 1346333 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 ||| ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 1346332 CCCATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 1346273 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 66664 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 1346272 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 1346213 Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 66724 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 1346212 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAG 1346153 Query 66725 GGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTGAAT 66782 || | ||||| || | || || | | || | || |||| |||||| | Sbjct 1346152 TGTGTCTTTCGAAATCATGGACGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 1346095 Query 66783 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 | |||||||| ||||| || || | || || || |||||||| || || || ||||| Sbjct 1346094 AGGTCCTCCATGACTTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACGGCG 1346035 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902 || | ||||| | ||||| || || || | | || || |||||| || || || Sbjct 1346034 ATGCGTGCGGCGAGGATGGCGTAGTCAGGGTACTTGGTTGTGAGAGTGGCAGCAATCTCC 1345975 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 1345974 GCCGCCAGCGTGTCAAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 1345915 Query 66963 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 67021 || | || | || || | | || |||| | || || || || |||| || Sbjct 1345914 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 1345856 Query 67022 ACGAGATGTGATTTTATCAAACATGAC 67048 |||||||||||||| || |||||||| Sbjct 1345855 GCGAGATGTGATTTTGTCGAACATGAC 1345829 >seq89 Length=2585884 Score = 105 bits (116), Expect = 9e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| ||||| || | |||||||| || | |||||| |||||||||||| | Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 777596 Query 65910 GCTTTCCA 65917 || | ||| Sbjct 777597 GCGTACCA 777604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 778616 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 778675 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 778676 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 778735 Query 66576 ATGTGCTGAGGTC 66588 |||||||| |||| Sbjct 778736 ATGTGCTGGGGTC 778748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || || |||||||| || || ||||| || || | || || | | Sbjct 780694 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 780753 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||| || || |||| || || |||||| || | || |||||||||||||| | Sbjct 780754 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 780813 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 780814 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 780859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658097941071160