Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq55 136 3e-27 seq13 82.4 5e-11 >seq55 Length=4282056 Score = 136 bits (150), Expect = 3e-27 Identities = 210/294 (71%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 91815 CCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA-CTGGAACAAAGTGGC 91873 ||||||| ||||||| || ||||||| || || | | ||| || || | | ||| Sbjct 3336725 CCTGCAAGGAGGACTGCAGAATCATCACAGAAACAG-CGTCCAAGCTCGAGCGCTGCGGC 3336783 Query 91874 TTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTGCGCAACTCGGCACTG 91933 |||||||||||||| |||| || ||||| || || || ||||| || || | | || Sbjct 3336784 TTCTACTGGGGTCCCCTGGGTGTGGAGGACGCTCACCGCATGCTTCGGGACGCCCCGTTG 3336843 Query 91934 GGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTCACGCTGTCGTATCAC 91993 |||||||| || || || |||||| | || || |||||||| ||||||||||| || ||| Sbjct 3336844 GGCAGCTTCCTTATCCGCGATAGCCGTCAGAAAGACGTCTTCTTCACGCTGTCCTACCAC 3336903 Query 91994 TCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACAAGCAATTTTCCTTGGCT 92053 | ||| ||||| ||||| ||| | || || |||||| | || | || || | || Sbjct 3336904 GCCAAGACGGGACCAGTCAGCGTGCGCATCGACTACAAGCGCCAGAAGTTCTCACTAGC- 3336962 Query 92054 GGGAGCAAACAGAGGT-TTTC--ATCGGTCCTTCTCCTGTTGGACCATTACATC 92104 | |||| || ||| |||| | | || || ||| ||||| ||||||||| Sbjct 3336963 --GGGCAACGAGCGGTCTTTCCAAACACTCTTTGCCCTCTTGGAGCATTACATC 3337014 >seq13 Length=10688992 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| ||||| ||||| |||||| || | || ||||| |||||||| || || | ||||| Sbjct 6295429 TGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCTGCTATCTACTGGC 6295488 Query 22808 TGAAGAAACGTTCGCTCATGCCAGG-GTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 ||||||| | ||| ||||| || || || | ||||||||| | |||||| | ||| Sbjct 6295489 TGAAGAAGAGGGGGCTAATGCCTGGCCTTAGC-TACTCCAACGAGCTCATTAGCAGGGAC 6295547 Query 22867 GA 22868 || Sbjct 6295548 GA 6295549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356194095808897