Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 439 4e-118 seq29 102 1e-16 seq89 96.9 5e-15 >seq38 Length=4945250 Score = 439 bits (486), Expect = 4e-118 Identities = 1278/1948 (66%), Gaps = 31/1948 (2%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 1347762 TTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 1347703 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 1347702 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 1347643 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || | || || Sbjct 1347642 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGC 1347583 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCCCAATCCCAAAG 79235 | || || || | || | | ||| || || || || || |||| | ||||| || Sbjct 1347582 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCCACAG 1347524 Query 79236 ATCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 || | || | | | | ||| | || || || ||||| || ||||| | || | Sbjct 1347523 GTCCGTTGGCGTCTTC-TCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 1347465 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 || ||| || ||||| | || || |||| | || || ||||| || || || Sbjct 1347464 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 1347405 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 | ||||| || || || || |||| | ||||| ||| || || |||| ||||| | Sbjct 1347404 CATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 1347345 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 1347344 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 1347285 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 1347284 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 1347225 Query 79535 TGAGATTCCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAAT---CG 79589 | | |||||||| ||||||||| ||| || | | ||| ||| ||| | || Sbjct 1347224 TCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATAAGTCCG 1347167 Query 79590 TCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 || | || ||||||| | |||||||| |||||||| ||||| || ||||| | Sbjct 1347166 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 1347107 Query 79650 AGCATCCGCATATTGTATT-----ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCT 79704 | | | || |||| | ||||| ||||| ||||| || ||||| ||||| || Sbjct 1347106 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCC 1347052 Query 79705 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCA 79764 | ||| || || || ||||| |||| || ||||| || || | ||| |||| || || Sbjct 1347051 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 1346992 Query 79765 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTT 79823 ||||| |||| || || || || || | ||| | | || ||||||| | | | ||| Sbjct 1346991 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 1346933 Query 79824 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 ||| || || || ||| || || | | ||| ||||| || ||||| || Sbjct 1346932 CACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 1346873 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 || | || || || ||| | |||||||||| ||||| ||| | | || || || Sbjct 1346872 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCG 1346813 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 80002 ||||| ||||| ||||| ||||| || || || || || || |||| || ||||||| Sbjct 1346812 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAG-TCCCTGGCTCGCTGCTCCT 1346754 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | ||||| || ||||| || || || || || | | | ||| | ||||| || |||| Sbjct 1346753 CCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCA 1346694 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 ||| ||||| | | || |||| |||||| || |||||||| | || | || |||| Sbjct 1346693 GGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGT 1346634 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 | || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| | Sbjct 1346633 TGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGT 1346574 Query 80183 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 |||| || ||| | ||| || | || | || || || || || ||| |||| Sbjct 1346573 AGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGA 1346514 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | | ||||| | || | ||| || ||||| ||||| ||||| ||||| ||||| | Sbjct 1346513 TGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGA 1346454 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 | || || ||||| |||| || | | | ||||| ||||| || | ||| || || | Sbjct 1346453 GCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGG 1346394 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 |||| || ||||| || || ||||| || ||||| ||||| || ||| || ||||| Sbjct 1346393 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTG 1346334 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 ||| ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 1346333 TCCCATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGC 1346274 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || | Sbjct 1346273 CATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGA 1346214 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602 | |||| || || || || ||||||| || || || | | ||| | || | Sbjct 1346213 AATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGA 1346154 Query 80603 TGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAA 80660 ||| | ||||| || | || || | | || | || || | |||||| | Sbjct 1346153 GTGTGTCTTTCGAAATCATGGACGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTA 1346096 Query 80661 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 80720 | |||||||| ||||| || || | || || || || ||||| || || || ||||| Sbjct 1346095 CAGGTCCTCCATGACTTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACGGC 1346036 Query 80721 TATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 80780 || | ||||| | ||||| || || || | | || || |||||| || || || Sbjct 1346035 GATGCGTGCGGCGAGGATGGCGTAGTCAGGGTACTTGGTTGTGAGAGTGGCAGCAATCTC 1345976 Query 80781 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 || ||||| ||||| | || || || || || || | || | || ||||| ||||| Sbjct 1345975 CGCCGCCAGCGTGTCAAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTT 1345916 Query 80841 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AA 80899 ||| | || | || || | | || |||| | || || || || |||| | Sbjct 1345915 CATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGA 1345857 Query 80900 TACGAGACGTGATTTTATCAAACATGAC 80927 | ||||| |||||||| || |||||||| Sbjct 1345856 TGCGAGATGTGATTTTGTCGAACATGAC 1345829 >seq29 Length=6224470 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 1441025 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1440966 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 1440965 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 1440906 Query 50102 CAAC 50105 | || Sbjct 1440905 CCAC 1440902 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 1451402 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1451461 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 1451462 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 1451521 Query 50102 CAAC 50105 | || Sbjct 1451522 CCAC 1451525 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || ||||||| || || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 1451834 TACGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGAAAA 1451893 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| | ||||| || | ||||||||| Sbjct 1451894 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 1451928 >seq89 Length=2585884 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || || | ||| ||||||||||| || || | | || || |||||||| ||||| | Sbjct 776903 GAGCCGGGGTAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGG 776962 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||| || ||||| || || |||| | ||||| || || ||| |||| ||| Sbjct 776963 GCAGCGTAGTACATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCA 777022 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 || ||||| | ||| ||||| || || || | || || |||||||| || || || Sbjct 777023 AACGGATAGCGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGC 777082 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 || || | ||| ||||| ||||||| Sbjct 777083 CTGTGACGCTTGTTAGACCTTTCAGC 777108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | |||||||||||||| || ||||| || || ||||| | ||| Sbjct 778616 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 778675 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || | || | ||||| | Sbjct 778676 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 778735 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 778736 ATGTGCTGGGGTC 778748 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| || || || | || ||||| || | |||||| |||||||||||| | Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || |||||||| |||| ||| | || ||||||||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 777596 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 777597 GCGTACCA 777604 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || || || ||||| || || ||||| || || | || || | | Sbjct 780694 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 780753 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| ||||| |||| || || |||||| || | || |||||||||||||| | Sbjct 780754 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 780813 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 780814 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 780859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718187105902360