Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 410 2e-109 seq89 96.9 5e-15 seq29 91.5 2e-13 >seq38 Length=4945250 Score = 410 bits (454), Expect = 2e-109 Identities = 1071/1616 (66%), Gaps = 23/1616 (1%) Strand=Plus/Minus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || ||||| || || || ||||||| || || || || |||| | | Sbjct 1347434 CGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGT 1347375 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| |||||| | || || || || || || | Sbjct 1347374 TGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCA 1347315 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||| || || || || || || || ||||| | | | || || | |||||| | Sbjct 1347314 ATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCA 1347255 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC-- 71645 || || || || || || |||| || || | || ||||| ||||||||| ||| Sbjct 1347254 CCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG 1347195 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 || | | ||| ||| ||| | ||| || | || ||| ||| | || || Sbjct 1347194 ATGCC--AATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGAC 1347137 Query 71703 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTG 71760 ||| |||||||| ||||| || ||||| | | || | || | | ||||| ||| Sbjct 1347136 AGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTG--TACTCGACGATTTCCGTG 1347079 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 ||||| || || ||||||||||| || | ||| || || || ||||| |||| || ||| Sbjct 1347078 CAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCA 1347019 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || | || |||| || || ||||| |||| || || || || || | ||| Sbjct 1347018 TCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT 1346959 Query 71881 A-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 71939 | | || ||||||| | | | ||| ||| || || || ||| || || | Sbjct 1346958 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAG 1346900 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| ||||| || ||||| ||| | || | || || || || ||||||||||| Sbjct 1346899 TTCTTCAAACTCCTCCCCCCA-GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 1346841 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 72057 ||||| ||| | | | || || ||||| ||||| ||||| ||||| || || | Sbjct 1346840 GGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 1346781 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 | || || || |||| || |||||||| ||||| || ||||| || || || || || Sbjct 1346780 AGAACAAG-TCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAG 1346722 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| | ||||| || |||| ||| ||||| | | || || | |||||| Sbjct 1346721 TCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTG 1346662 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || |||||||| | || | || ||||| || ||||| ||||||||||| | | || Sbjct 1346661 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCG 1346602 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||| || ||||| |||| ||| ||||| || ||| | ||| ||| | || Sbjct 1346601 TTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCC 1346542 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || || || || || ||| ||||| | ||||| | || | ||| || ||||| Sbjct 1346541 ACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATC 1346482 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 ||||| || || |||||| ||||| || || || ||||| |||| || | | | Sbjct 1346481 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 1346422 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| || || ||||| || ||||| || || ||||| || ||| Sbjct 1346421 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 1346362 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || ||||| || ||| || ||||| ||| ||||| || || || | ||| | | Sbjct 1346361 TAGGTCTCGATGGCTTTTTTGATATCTGTCCCATGGATTCCCACAGCCACCCTCATGAGC 1346302 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || ||||| || | ||| | | ||| ||| || || | || |||||| |||| | Sbjct 1346301 ATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGA 1346242 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657 || || || ||||| ||||||| || || |||| || || || || |||| || || Sbjct 1346241 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGG 1346182 Query 72658 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTC 72717 || || | | ||| || || | ||| | ||||| || | || || | Sbjct 1346181 CGGTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAATCATGGACGA--GTGGC 1346124 Query 72718 CCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 | || | || || | |||||| | | |||||||| ||||| || || | || | Sbjct 1346123 GTTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACTTCGCTGAACACCTTCT 1346064 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 | || || ||||| || || || ||||| || | ||||| || ||||| || || || | Sbjct 1346063 TCGTCTCTTTGTGCAGGTTAGAGACGGCGATGCGTGCGGCGAGGATGGCGTAGTCAGGGT 1346004 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 | || || |||||| || || || || ||||| ||||| | || || || || | Sbjct 1346003 ACTTGGTTGTGAGAGTGGCAGCAATCTCCGCCGCCAGCGTGTCAAGCTCCACAGTGGTGA 1345944 Query 72896 CTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 72955 | || | || | || ||||| |||||||| | || | || || | | || Sbjct 1345943 CGCCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCA 1345884 Query 72956 TGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 |||| | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 1345883 TGTTGAGTCCGTAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 1345829 >seq89 Length=2585884 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| || || ||||| || || | || || || | Sbjct 780694 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 780753 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| ||||| |||| || || |||||| || | ||||||||||||||||| | Sbjct 780754 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 780813 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 780814 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 780859 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || || ||||| ||||| || | |||||||| || | |||||| |||||||||||| | Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || |||||||| |||| || | || ||||||||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 777596 Query 71872 GCTTTCCA 71879 || | ||| Sbjct 777597 GCGTACCA 777604 >seq29 Length=6224470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 1440593 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGAAAA 1440534 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 1440533 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 1440499 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| || || || ||||| || ||||| |||||||| Sbjct 1451834 TACGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGAAAA 1451893 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 1451894 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 1451928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671062866305240