Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq65 150 4e-31 seq29 104 5e-17 seq13 89.7 1e-12 >seq65 Length=3759856 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 3001583 ATGCCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3001524 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| || || || Sbjct 3001523 GACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGG 3001464 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| || || || || ||||| || | ||| || || || || Sbjct 3001463 GGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 3001404 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||||||||| || ||||| ||||| |||||||| || Sbjct 3001403 ACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3001351 >seq29 Length=6224470 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 1440902 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGG 1440961 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 1440962 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 1441021 Query 269258 GA 269259 || Sbjct 1441022 GA 1441023 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 1451525 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGG 1451466 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 1451465 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 1451406 Query 269258 GA 269259 || Sbjct 1451405 GA 1451404 >seq13 Length=10688992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| ||||| || ||||| || || || ||||| ||||||| ||| Sbjct 6295428 GTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 6295487 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || || || ||||| || | | | ||| ||||| | || ||||||||| Sbjct 6295488 CTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTCATTAGCAGGGAC 6295547 Query 269258 GA 269259 || Sbjct 6295548 GA 6295549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151264168895092