Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq67 141 1e-28 seq47 118 2e-21 seq111 114 2e-20 >seq67 Length=3709677 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| |||||||||||||| || |||| ||||| Sbjct 1684659 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 1684600 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| ||| | || | || || |||||| |||| | | | Sbjct 1684599 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 1684540 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| ||||||||||| || | || ||||| || || Sbjct 1684539 GGCTTCTCCACCAGCAGGCCCGGGTAGAACTCCACAGCATCCACGTGCCCGTACAGCTCC 1684480 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||||| ||||| || || |||| Sbjct 1684479 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 1684449 Score = 136 bits (150), Expect = 6e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| | |||||| || | |||||| || ||| ||||||| ||| | ||| || | Sbjct 1683021 CCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTGTGGGTGGACC 1682962 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||||| ||||||||||| | ||||||||| | |||||| || || ||||||||||| Sbjct 1682961 TCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCATATGGTGGCGTACATCATC 1682902 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 |||||||| ||||||||||| ||||| || ||||| || Sbjct 1682901 AGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACGGC 1682864 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTG---G 9378 ||||| || || || || || || |||||||| || || || | | | |||||||| | Sbjct 1683633 CTTACCCGTCCCGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCG 1683574 Query 9379 GTCATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATC 9438 |||| || ||| ||||| | || || | ||||| || | ||| | || || Sbjct 1683573 GTCACGAC---GGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCGATG 1683517 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | || ||| ||||| |||| |||||||| || | |||| ||||| || || Sbjct 1683516 TGGAAACTATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGACGCGATG 1683457 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || || ||||||||||| || | ||||||||| ||||| | |||| | | || Sbjct 1683456 CGGTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAA 1683398 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 ||| |||||||| || ||||| || || Sbjct 1683397 GTGATAGCCGCTCAGATGCTGCACGTA 1683371 >seq47 Length=4508581 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || || Sbjct 426133 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 426074 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || | Sbjct 426073 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 426014 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | || |||| ||| || |||| ||| || |||| ||| || |||| Sbjct 426013 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGAGCGTCAATGT 425954 Query 8931 CTCCGTAAAG 8940 | ||||| || Sbjct 425953 CACCGTAGAG 425944 >seq111 Length=2041907 Score = 114 bits (126), Expect = 2e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| |||| |||| ||| || || | | ||| || |||||||||| | Sbjct 111366 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCATCTTGACGATATTA 111307 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | || |||||||| ||| Sbjct 111306 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 111247 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||||| || ||||| ||||| |||| ||| | |||||||| || || ||| Sbjct 111246 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 111187 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || |||||| || || | || | || | ||| || |||| || || ||||| Sbjct 111186 GCATTAGGACGGATTTTCTCTAGCATTATGCCTGGGTAAAATTCCAGGGCGTCTATGTCA 111127 Query 8933 CCGTAAAG 8940 || || || Sbjct 111126 CCATAGAG 111119 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||||| | ||||| || || || || ||| ||| ||||| Sbjct 108269 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGC 108210 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || || | || || |||||||| ||||||| ||||| || || || ||||| Sbjct 108209 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 108150 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | ||||| |||| | |||||| |||| ||||||| ||||||||| | | | | || Sbjct 108149 GTTAGACCCGGCAGGATGCCAAATACCTCCTGACCGATGGCCAGACGCCTGTCTGCTGGG 108090 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 | | |||||| | ||||||||| |||| || Sbjct 108089 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 108055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708444214160560