Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq172 178 2e-40 seq2 178 2e-40 seq377 170 3e-38 seq3217 152 8e-33 seq8 150 3e-32 >seq172 Length=1159537 Score = 178 bits (196), Expect = 2e-40 Identities = 202/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| ||||||||||| || ||||| ||||||||||| Sbjct 1117021 CGCAAAGCGTCACCGTAAGGTTCTTCGTGATAACATCCAGGGCATCACTAAGCCAGCTAT 1117080 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| |||||||| ||||||||| | ||||| | |||| || |||| Sbjct 1117081 CCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGTCTCATCTACGAGGAGAC 1117140 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 1117141 CCGTGGCGTCTTGAAGGTCTTTCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1117200 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 1117201 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGACAGGG 1117260 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || ||||| ||||| || Sbjct 1117261 CCGCACTCTGTACGGCTTTGGTGGTTAAGCT 1117291 Score = 165 bits (182), Expect = 1e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || ||||||||||| || ||||| ||||||||||| Sbjct 1126672 CGCAAAGCGTCACCGTAAGGTGCTGCGTGATAACATCCAGGGCATCACTAAGCCAGCTAT 1126613 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| |||||||||||||||||| | ||||| | |||| || |||| Sbjct 1126612 CCGCCGCCTGGCTCGCCGTGGTGGAGTCAAGCGTATTTCTGGTCTCATCTACGAGGAGAC 1126553 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||| |||| || ||| ||| |||| || || || ||| || || Sbjct 1126552 CCGTGGCGTCTTGAAGGTCTTTCTGGAGAACGTCATCCGCGACGCCGTCACCTACACAGA 1126493 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| |||||||| | || || || | || | || || Sbjct 1126492 GCACGCCAAGAGAAAGACCGTCACTGCCATGGATGTGGTGTACGCTCTCAAGAGACAGGG 1126433 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || ||||| ||||| || Sbjct 1126432 CCGCACTCTGTACGGCTTTGGTGGTTAAGCT 1126402 >seq2 Length=19631327 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| ||||| ||||| || ||||||||||| ||||| Sbjct 17594763 CGCTAAGCGTCACCGGAAAGTTCTTCGTGATAATATCCAGGGTATCACCAAGCCCGCTAT 17594822 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || |||||| | || || || |||| || |||| Sbjct 17594823 CCGCCGTCTGGCCCGCCGTGGCGGTGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 17594882 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| ||| ||| | ||| || || Sbjct 17594883 CCGTGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGTGACGCTGTTACCTACACTGA 17594942 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | ||||| | || || || |||| || || || Sbjct 17594943 GCACGCGAAGAGGAAGACTGTGACCGCTATGGACGTGGTGTACGCTCTGAAGCGGCAGGG 17595002 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| ||||| Sbjct 17595003 TCGCACTCTGTATGGTTTCGGAGGTTAA 17595030 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | | || || ||||||||||| || |||||||| || || || Sbjct 15841596 CGCCAAACGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGTATCACCAAACCCGCGAT 15841537 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| ||||||| || |||| || |||| Sbjct 15841536 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 15841477 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||| | ||| ||| |||| |||||| || ||| || || Sbjct 15841476 CCGCGGAGTGCTGAAGGTGTTCTTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGA 15841417 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || ||||| |||| | || || Sbjct 15841416 GCACGCTAAGAGGAAGACTGTAACCGCCATGGATGTGGTGTATGCTCTGAAGAGACAGGG 15841357 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 15841356 CCGCACTCTGTACGGCTTCGGCGGTTAAACT 15841326 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | |||||| |||||||||||||| || || ||||| ||||| Sbjct 18427152 CGCTAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGCATTACTAAGCCCGCTAT 18427211 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| ||||| || |||||| |||| || || | || || |||| Sbjct 18427212 TCGCCGCTTGGCCCGTCGCGGTGGTGTGAAGCGTATCTCCGGCCTGATTTACGAGGAGAC 18427271 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | ||| || |||| ||| || || ||| || || Sbjct 18427272 CCGCGGTGTACTAAAGGTGTTCTTGGAGAATGTGATCCGTGACGCAGTCACCTACACTGA 18427331 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| | ||| | || || Sbjct 18427332 GCACGCCAAGAGAAAGACTGTGACCGCAATGGATGTGGTGTATGCTCTTAAAAGGCAGGG 18427391 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 18427392 CCGTACTCTATACGGTTTCGGAGGTTAA 18427419 >seq377 Length=136998 Score = 170 bits (188), Expect = 3e-38 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 37971 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 37912 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 37911 CCGTCGTCTGGCTCGCCGCGGCGGAGTGAAGCGCATCTCCGGTCTGATCTACGAGGAGAC 37852 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | ||| ||| |||| ||| || || ||| || || Sbjct 37851 CCGCGGTGTGCTCAAGGTGTTCTTGGAGAACGTCATCCGTGACGCCGTCACCTACACTGA 37792 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 37791 GCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGG 37732 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || ||||| || ||||| || || Sbjct 37731 CCGCACTCTGTACGGTTTCGGCGGTTAAACTCCT 37698 >seq3217 Length=3262 Score = 152 bits (168), Expect = 8e-33 Identities = 191/262 (73%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | |||||| |||||||||||||| || || ||||| ||||| Sbjct 724 CGCTAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGCATTACTAAGCCCGCTAT 783 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| ||||| || |||||| |||| || || | || || |||| Sbjct 784 TCGCCGCTTGGCCCGTCGCGGTGGTGTGAAGCGTATCTCCGGTCTGATTTACGAGGAGAC 843 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | ||| || |||| ||| || | ||| || || Sbjct 844 CCGCGGTGTACTAAAGGTGTTCTTGGAGAATGTGATCCGTGACGCAGTGACCTACACTGA 903 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| | ||| | || || Sbjct 904 GCACGCCAAGAGAAAGACTGTGACCGCAATGGATGTGGTGTATGCTCTTAAAAGGCAGGG 963 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 ||||| | || ||||| ||| Sbjct 964 CCGTACTCTATACGGTTTCGGA 985 >seq8 Length=13932129 Score = 150 bits (166), Expect = 3e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| ||||||||||| || || || Sbjct 13267798 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGAATCACCAAACCCGCCAT 13267739 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 13267738 CCGCCGTCTTGCTCGCCGTGGCGGAGTGAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 13267679 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || || ||||| Sbjct 13267678 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACTTACACCGA 13267619 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 13267618 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAGGG 13267559 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 13267558 CCGCACTCTGTACGGCTTCGGCGGTTAAACT 13267528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066880720607