Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq38 206 3e-48 seq65 120 3e-22 seq89 118 1e-21 seq92 104 2e-17 >seq38 Length=4945250 Score = 206 bits (228), Expect = 3e-48 Identities = 962/1508 (64%), Gaps = 42/1508 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| || | | ||| || || || | ||| ||| ||| Sbjct 1347705 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 1347646 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| | || | Sbjct 1347645 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGC 1347586 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||| || || ||| | ||||| ||| ||| ||||| Sbjct 1347585 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1347526 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||| | |||||||| || | || | Sbjct 1347525 AGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAG 1347466 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| | | || |||| || | | || |||||||| ||||| |||| || Sbjct 1347465 CCTTCGTACGTCTCATAGGTGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAG 1347408 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || | |||| |||||||| || || |||||||||| || || ||| || Sbjct 1347407 CGGCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAA 1347348 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| || | || ||||| || | ||||| | || | || || |||| Sbjct 1347347 AGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCC 1347288 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 || |||||| | |||| || || | || || || |||||||| | Sbjct 1347287 TGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCT 1347228 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCAAACCG 145593 | |||||||| | || | ||| || || | | |||| || |||| ||||||| | Sbjct 1347227 TGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATA--- 1347173 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || | ||| | || | | |||| |||| || |||| ||| ||||| ||| Sbjct 1347172 AGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCA- 1347114 Query 145654 CTCCTCGGCGTCGCT---GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 ||||| | | ||| ||| | ||||| || | ||| | ||||| || |||||||| Sbjct 1347113 --CCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGT 1347056 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 |||||||| ||||| || || ||||||||||| || || ||||||| ||||||||| Sbjct 1347055 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGT 1346996 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 || || || ||||| ||| | ||| | || | | | ||| || |||| Sbjct 1346995 CCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT--AGCTGCTGAGCCTTCACCACA 1346938 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||| | ||||| || ||| | ||||||| || |||||| | || || Sbjct 1346937 CGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 1346878 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || || ||| ||||| || | | ||||||||||| ||||| | |||| | Sbjct 1346877 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCC 1346818 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGC 146006 || |||| ||| || | || || | |||||| ||||| | |||||| | || | ||| Sbjct 1346817 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGC 1346758 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 ||||| ||| |||| ||||| | || | | | || |||||| | Sbjct 1346757 --TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGG 1346700 Query 146067 GTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| ||| || | || ||||| ||||| || || | ||| Sbjct 1346699 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCG 1346640 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 | ||||||| | || | || ||| || ||| ||| ||| |||||| || | Sbjct 1346639 CTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGG 1346580 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACT 146243 || | | || ||| | | ||| || |||||| | || ||| | | | Sbjct 1346579 CGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATT 1346520 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCG 146301 |||| || |||||| | ||||| |||||||| || || ||||| || |||| Sbjct 1346519 TGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTC- 1346461 Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361 ||| ||||||| ||||| | ||| ||||| | | || || || ||| | || Sbjct 1346460 -ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGT 1346402 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420 |||| ||||| || || || || || | || || || || ||||| || | || Sbjct 1346401 CGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTCTCGATGGCTTTTT 1346343 Query 146421 GAATGTC-GTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 || || ||| ||||| || |||| ||| || | |||||||||||| || || ||||| Sbjct 1346342 TGATATCTGTC-CCATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCA 1346284 Query 146480 GCCACTT---GATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAA 146536 || |||| |||| ||||||| || ||| | |||||| || ||| | || || Sbjct 1346283 GCTACTTTGCCATTG---ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 1346227 Query 146537 AATTTGTA 146544 || ||||| Sbjct 1346226 AAGTTGTA 1346219 >seq65 Length=3759856 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 3001581 GCCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3001522 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3001521 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3001462 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 3001461 AATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3001402 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| ||||| ||||| ||||| || || ||||||||| Sbjct 3001401 CTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATG 3001353 >seq89 Length=2585884 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||||||||||| Sbjct 777466 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 777525 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||| || || ||||| || |||||||| | |||||| ||| ||||| || ||||| Sbjct 777526 TACTCTTTCTATTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 777585 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 777586 ACTCAATGAT 777595 >seq92 Length=2575742 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 2563971 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2564030 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 2564031 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGG 2564090 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 2564091 AATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 2564150 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || || ||||||||| || Sbjct 2564151 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGGCT 2564202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471959114444160