Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq266 127 1e-24 seq205 127 1e-24 seq10 122 6e-23 seq65 89.7 3e-13 >seq266 Length=407943 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 76316 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGT 76257 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 76256 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 76222 >seq205 Length=762381 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 100984 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGT 101043 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 101044 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 101078 >seq10 Length=12214001 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 5446657 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 5446598 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 5446597 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 5446538 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 5446537 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGATCT 5446486 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 5447839 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 5447780 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 5447779 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 5447720 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 5447719 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGATCT 5447668 >seq65 Length=3759856 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||||| || | ||||| ||| |||||| || || ||||| || ||| Sbjct 3001580 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3001521 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || |||| ||| Sbjct 3001520 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3001461 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| ||||| ||| ||||||| | || || | ||||| Sbjct 3001460 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3001401 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 || | || || || ||||| || | ||||||||| || ||||||||||||| Sbjct 3001400 TCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTTTT 3001349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334910056344269