Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq38 111 3e-19 seq1170 98.7 2e-15 seq45 98.7 2e-15 seq142 93.3 9e-14 seq2 93.3 9e-14 seq178 91.5 3e-13 seq26 91.5 3e-13 seq3 91.5 3e-13 seq359 89.7 1e-12 seq23 89.7 1e-12 seq13 89.7 1e-12 seq94 87.8 4e-12 seq11 87.8 4e-12 seq24 86.0 1e-11 >seq38 Length=4945250 Score = 111 bits (122), Expect = 3e-19 Identities = 238/353 (67%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 293907 CTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCC 293966 ||| ||||| ||||||||||| || || | || ||||| |||| |||||||||||| Sbjct 1347112 CTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCC 1347053 Query 293967 CGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACC 294026 | ||| ||| || |||| ||| ||||||| || | || ||| | || Sbjct 1347052 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCC 1346993 Query 294027 CGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTT 294086 ||||| |||| | || || | | ||| | | ||||||||||||| ||||| Sbjct 1346992 GGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTT 1346933 Query 294087 TGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATC 294146 || ||||||| |||||| ||||||| || ||||| | |||| || | || Sbjct 1346932 CACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 1346873 Query 294147 AGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGC 294205 | ||| || ||||| ||| | || || | || ||||| | | | ||||||| | Sbjct 1346872 ATCCAGCCCGGGGCAGTCG-GCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCC 1346814 Query 294206 GCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGC 294258 |||||||||| || ||| || ||||| ||||| ||||||| | ||| ||| Sbjct 1346813 GCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGC 1346761 >seq1170 Length=10719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2809 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2868 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| |||||| Sbjct 2869 CCCACGTTGGGCGGAAGTC 2887 >seq45 Length=4557031 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3941797 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3941738 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| |||||| Sbjct 3941737 CCCACGTTGGGCGGAAGTC 3941719 >seq142 Length=1513028 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1149937 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1149996 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1149997 GCCCCACGTTGGGC 1150010 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1151356 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1151297 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1151296 GCCCCACGTTGGGC 1151283 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1029931 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1029872 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1029871 CCCCACGTTGGGC 1029859 >seq2 Length=19631327 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 |||| | ||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 6442359 GGTGCTACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTG 6442418 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||||| | |||| Sbjct 6442419 GGTTCGAGCCCCACGTTGGGC 6442439 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2208191 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2208132 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2208131 CCCCACGTTGGGC 2208119 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6445458 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6445517 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6445518 CCCCACGTTGGGC 6445530 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6435697 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6435756 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6435757 CCCCACGTTGGGC 6435769 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||| Sbjct 6437642 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGATTCGAG 6437701 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 6437702 CCCCACGTTGGGCGGA 6437717 >seq178 Length=1067277 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 470385 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 470326 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 470325 CCCCACGTTGGGC 470313 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 469821 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 469880 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 469881 CCCCACGTTGGGC 469893 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| Sbjct 479757 AGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 479698 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 479697 CCCCACGTTGGGC 479685 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 |||| | ||||| | |||||||||||||||||| ||||||||||| | ||||||| Sbjct 441036 GGTGTGCAAGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTG 441095 Query 142555 GGTTCGAGCCCCACATCGGGCAGA 142578 |||||||||||||| | |||| || Sbjct 441096 GGTTCGAGCCCCACGTTGGGCGGA 441119 >seq26 Length=6558494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1254489 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1254548 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1254549 CCCCACGTTGGGC 1254561 >seq3 Length=19510765 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2070389 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2070448 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2070449 CCCCACGTTGGGC 2070461 >seq359 Length=168630 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 61699 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 61758 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 61759 CCCACGTTGGGC 61770 >seq23 Length=6880249 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1510202 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1510261 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1510262 CCCACGTTGGGC 1510273 >seq13 Length=10688992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 10365745 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 10365804 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 10365805 CCCACGTTGGGC 10365816 >seq94 Length=2478824 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 1834836 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 1834778 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 1834777 TCGAGTCCCGGCAGAGA 1834761 >seq11 Length=11183424 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| Sbjct 7631065 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 7631124 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7631125 CCCCACGTTGGGC 7631137 >seq24 Length=6819339 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 6488924 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 6488865 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 6488864 TCCCGGCAGAGA 6488853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027716973822259