Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq92 165 2e-35 seq65 145 1e-29 seq29 87.8 3e-12 >seq92 Length=2575742 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 2563991 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 2564050 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || ||||| ||||||||||||||||| || || | Sbjct 2564051 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGA 2564110 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || ||||||||| ||| |||||||| | || || |||| ||||||||| || | Sbjct 2564111 TTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 2564170 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||| || || |||||||| Sbjct 2564171 CAGTGAGGGTCTTCACAAAGATCTGCAT 2564198 Score = 154 bits (170), Expect = 3e-32 Identities = 160/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 |||| || |||||||| || |||||||| || || ||||| || | ||||||| | || Sbjct 2563767 AGTG-AGGGTGGACTCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTTCAGCT 2563825 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| || | || || || || || ||||| ||||||||||||||||| || || || | Sbjct 2563826 GCTTGCCATCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTT 2563885 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 | ||||||| | ||| |||||||| ||| | || || |||| ||||||||| || || Sbjct 2563886 TAGCCTTGATGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCA 2563944 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || |||||||| Sbjct 2563945 GTGAGGGTCTTCACCAAGATCTGCAT 2563970 >seq65 Length=3759856 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || ||||| || || | Sbjct 3001571 AGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 3001512 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || |||||||| |||||||||||| Sbjct 3001511 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 3001452 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || |||||||| ||| |||||||| | || || || | ||| Sbjct 3001451 TTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTG 3001392 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || || |||||||| Sbjct 3001391 ATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCAT 3001354 >seq29 Length=6224470 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1441943 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 1441884 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 1441883 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 1441848 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1450484 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 1450543 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 1450544 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 1450579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921517576972280