Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq38 491 8e-134 seq29 136 7e-27 seq89 100 5e-16 seq13 87.8 3e-12 >seq38 Length=4945250 Score = 491 bits (544), Expect = 8e-134 Identities = 977/1436 (68%), Gaps = 42/1436 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068 ||||| |||| |||| |||||| | ||| | || ||||||| |||| | ||| Sbjct 1347786 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACATGCCC---CTCTCT 1347730 Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 ||| | | || |||||| ||| || | ||||||||| ||||| ||||| ||||| Sbjct 1347729 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 1347670 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 1347669 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 1347610 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || |||| |||||| |||||||||||||| || | ||| Sbjct 1347609 GAGGCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 1347550 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | ||| | |||| | |||||||| Sbjct 1347549 TCCTTCAGCAGCTTCCAGTCCCACAGGTCCGT-------TGGCGTCTTCT--CCCACATG 1347499 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||| || || || ||| ||||| ||| |||| ||| | Sbjct 1347498 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGA-G 1347440 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423 | | | |||||||| |||||| | || | ||||| || || || ||||| |||||| Sbjct 1347439 CTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTG 1347380 Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGA 244481 || ||| || | | |||| | || | || ||||| | ||| | |||||| Sbjct 1347379 GATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATAAGGATGAAGG 1347324 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| |||||| || ||||| || || || ||||| ||| |||| || | | ||| Sbjct 1347323 CATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGG 1347264 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||| ||| ||||| ||||| |||||| |||||||| | ||| | | || | | Sbjct 1347263 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTT 1347204 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | ||| |||| | |||||| || || | ||| | | || Sbjct 1347203 TGGTC-ACGGATGCCAATTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG------ 1347157 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| ||||| |||||| ||||| || |||||||| ||| | | Sbjct 1347156 ---ACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTA 1347100 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||| || || ||||| ||||| |||||||||||||||||||| | ||| || Sbjct 1347099 GTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 1347040 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||| || ||||||| |||| | ||| |||||| || ||| Sbjct 1347039 TTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGC 1346980 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | ||| || | | |||||| ||| | || | ||||| Sbjct 1346979 GACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCC 1346920 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 ||| || | |||||| || | || ||||| |||||| ||| || || |||||| Sbjct 1346919 CTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGG 1346860 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || ||||| ||||| || ||| || | || || |||| || |||||||||| Sbjct 1346859 CAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGG 1346800 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| ||||| | ||| | |||||||| | |||||| ||| || |||||| Sbjct 1346799 TCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTC 1346740 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| |||||| || || |||| |||||||||||||| ||| | |||| | Sbjct 1346739 TTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAG 1346680 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGC 245200 |||||||| | |||||||| ||||| || || | | | |||| | | | | Sbjct 1346679 GCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC 1346620 Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC 245260 | | || || | ||||| || |||||||||||| ||||||| ||| || Sbjct 1346619 AACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGAT 1346560 Query 245261 CTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTC 245320 || | | ||||| | || ||| | || ||||| ||||||||||||||||| | Sbjct 1346559 CTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGC 1346500 Query 245321 TTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAG 245380 || | ||||| || ||||| |||||||| ||||||| |||||| |||||| | Sbjct 1346499 TTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTG 1346440 Query 245381 GACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 |||||||| ||| || | | | | ||||| || || ||| ||||||||| || Sbjct 1346439 GACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAA 1346384 >seq29 Length=6224470 Score = 136 bits (150), Expect = 7e-27 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| ||||||||||||||| | |||||| ||||||||| Sbjct 1440900 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCT 1440959 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1440960 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 1441018 Query 42825 GACGAGG 42831 ||||||| Sbjct 1441019 GACGAGG 1441025 Score = 136 bits (150), Expect = 7e-27 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| ||||||||||||||| | |||||| ||||||||| Sbjct 1451527 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCT 1451468 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1451467 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 1451409 Query 42825 GACGAGG 42831 ||||||| Sbjct 1451408 GACGAGG 1451402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 1440714 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTCAAC 1440773 Query 42669 TGGATCG 42675 ||||||| Sbjct 1440774 TGGATCG 1440780 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 1451713 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTCAAC 1451654 Query 42669 TGGATCG 42675 ||||||| Sbjct 1451653 TGGATCG 1451647 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1441853 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1441912 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1441913 GGTGGGCGAGTACCAG 1441928 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1450574 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1450515 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1450514 GGTGGGCGAGTACCAG 1450499 >seq89 Length=2585884 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | ||| ||||| ||||||| || | |||||| Sbjct 776491 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 776550 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| | || ||||| ||||| || ||| || || ||||| || |||| ||||| Sbjct 776551 GGACTCATTATTACCCAGGATCTGGGCAGTGGATGCTGTGGGCATTGGGGACAAAAGCAG 776610 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243 || |||||||| || ||||| ||||| Sbjct 776611 GCTATTCCTCACACCATGCCTGAGGATG 776638 >seq13 Length=10688992 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || |||||||||||||| || | || || Sbjct 6295416 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 6295475 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||||| ||| ||| || | ||||| || || | || ||| ||||| ||| Sbjct 6295476 GCTATCTACTGGCTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 6295535 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||||||||||| Sbjct 6295536 ATTAGCAGGGACGAGG 6295551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944231793220240