Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq92 122 2e-22 seq65 111 4e-19 >seq92 Length=2575742 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || ||||| | ||| || || ||||| || |||| Sbjct 2563968 CATG-CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 2564026 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| | || || || || |||||||| | ||| || | Sbjct 2564027 CAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 2564086 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| |||||||||||||| || || ||||| || || | || || | | Sbjct 2564087 GTGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCT 2564146 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || || ||||| || || |||||||| Sbjct 2564147 CAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2564198 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || |||| | || || || | ||| Sbjct 2563780 TCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTTCAGCTGCTTGCCATCAAAG 2563839 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||| || ||||| |||||||||||||| || || | ||| Sbjct 2563840 ATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTTTAGCCTTGATGTTC 2563899 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || || || ||||| || Sbjct 2563900 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACC 2563959 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2563960 AAGATCTGCAT 2563970 >seq65 Length=3759856 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || |||| ||| || || ||||| || |||| Sbjct 3001584 CATG-CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 3001526 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || || || || |||||||| | ||| || | Sbjct 3001525 CGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---T 3001469 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| |||||||||||||| || || || || || || | || || | Sbjct 3001468 CGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGG 3001409 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || || || || || |||||||| Sbjct 3001408 GCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCAT 3001354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179516874784122