Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq38 163 3e-35 seq29 86.0 7e-12 seq13 86.0 7e-12 >seq38 Length=4945250 Score = 163 bits (180), Expect = 3e-35 Identities = 826/1296 (64%), Gaps = 24/1296 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 1347666 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1347607 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 1347606 GCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 1347547 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||||| | | | ||| | | || |||||| || ||||||| Sbjct 1347546 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 1347487 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || || | | ||||| || || | ||||| || | ||| | | |||| Sbjct 1347486 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGC 1347427 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| ||||||| || | || || | ||||||||||||||| || | || | || Sbjct 1347426 TCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGA--GCA 1347369 Query 114242 -TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCT 114298 ||| |||||| | ||||| | || ||| || || || |||| || | || Sbjct 1347368 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCC 1347310 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 114358 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 1347309 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 1347250 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 1347249 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 1347191 Query 114419 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 |||| || ||| || | || ||| |||| ||| | || |||| || Sbjct 1347190 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 1347134 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 1347133 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAG 1347074 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| |||||||||| |||| || || ||| |||| || ||||| || Sbjct 1347073 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 1347014 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 1347013 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 1346954 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || || || || | | ||||||| ||| || | |||||||| ||| Sbjct 1346953 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTT 1346895 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 ||||||| || ||| | ||| ||||| || | | || || | || |||| Sbjct 1346894 CAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACC 1346835 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | ||| || ||||||||||||||||| |||||||| || || |||| | Sbjct 1346834 AGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACA 1346775 Query 114837 GATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 |||| || ||| || | | ||| || || || ||||| |||||| | Sbjct 1346774 AGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGAAAGTCGAAC 1346716 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGC 114951 | ||| |||||| || |||||||||| |||| | || ||| | | || | Sbjct 1346715 ACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC-C 1346657 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 ||| | ||||| | ||||||| || | || | | |||||| | || || | || Sbjct 1346656 CTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGA 1346597 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGCATA 115069 ||| || || || || | ||| ||| | || | || || || Sbjct 1346596 ACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CACG 1346539 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 1346538 CCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCC 1346479 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||| |||| |||| | |||| ||||||||||| |||| || ||||| || Sbjct 1346478 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTT 1346419 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||| ||||||||||| || | |||||| ||||| Sbjct 1346418 CCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 1346383 >seq29 Length=6224470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1441025 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1440966 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || || |||||||||||||| ||||||||| Sbjct 1440965 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1440916 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1451402 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1451461 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || || |||||||||||||| ||||||||| Sbjct 1451462 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1451511 >seq13 Length=10688992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | ||||| || || ||| ||| || || ||||| || |||| ||||| Sbjct 6295551 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 6295492 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||| | || ||| ||||||||| ||||||||||| || |||||| Sbjct 6295491 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6295442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597285658494920