Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq38 154 1e-32 >seq38 Length=4945250 Score = 154 bits (170), Expect = 1e-32 Identities = 589/921 (64%), Gaps = 8/921 (1%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| || ||||| || ||||| |||||| Sbjct 1346219 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTAAAGATCAATGGCAAA 1346278 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || |||| ||| | || || | || || || || || Sbjct 1346279 GTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCATGGGACAGAT 1346338 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGCC 93894 || || | | | | | || || ||| | || ||| ||| ||| ||| Sbjct 1346339 ATCAAAAAAGCCATCGAGACCTACA---ACCTGCTGTCAGAGAAGTGGTTCACCCACGCC 1346395 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 |||||||||| ||||| || || ||| ||| ||| |||| || |||||| | Sbjct 1346396 TCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTC 1346455 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| ||| |||| || || | ||||| || ||| | || || |||| Sbjct 1346456 GCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATC 1346515 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || |||| || || || || || | ||| | | | | ||| ||| |||| Sbjct 1346516 TCCAAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTGCATTAGATCCACGGGGAGCTAC 1346575 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| ||| ||||| ||| |||||||| |||||||| ||| | |||| | ||||||| Sbjct 1346576 ATCGCCGGCACCAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAAC 1346635 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | ||||| || || || ||||| || | || || | ||||| | || || Sbjct 1346636 ACAGCGCGTTATGTTGATCAGGGGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTG 1346695 Query 94195 GAGCCCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||||||||| || ||| | ||||| | || ||| |||||| || || || Sbjct 1346696 GAGCCCTGGCACTTCGATGTGTTCGACTTTC-TGGAGCTGAAGAAGAACACGGGAAAGGA 1346754 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | || | ||||| ||| | |||||||| || ||| | || ||||| || ||||| || Sbjct 1346755 GGAGCAGCGAGCCAGGGACTTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCG 1346814 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| ||| | | |||| || | ||||| || || ||||| ||| || Sbjct 1346815 GGTGGAGAACAACACAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGA 1346874 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || || | |||||||| | || | | || || | |||| | || | Sbjct 1346875 GTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAA 1346934 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | |||| ||| || ||| | || ||| || || || Sbjct 1346935 GCGTGTGGTGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGG 1346994 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||| ||||| | | ||| || | |||| ||| |||||||||| | || || Sbjct 1346995 GACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGG 1347054 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||| || || || ||||| || || |||||||| ||| ||||||| | Sbjct 1347055 CACCATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGT 1347114 Query 94614 TGCTGTGTGTAACCTGGGCTC 94634 || || || || |||| ||| Sbjct 1347115 GGCGGTTTGCAATCTGGCCTC 1347135 Score = 131 bits (144), Expect = 2e-25 Identities = 224/318 (70%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||||||| | |||| |||| | |||| || ||| ||| |||| |||||| ||| Sbjct 1347480 AGGGCATTCTCCAGTACGACATGTGGGAGAAGACGCCAACGGACCTGTGGGACTGG-AAG 1347538 Query 95054 CT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || || | | | ||| |||||| || |||| ||| ||||| || |||| | Sbjct 1347539 CTGCTGAAGGAGAAGATCGC--CAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCGA 1347596 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||||||||||||||| || |||||||| |||||||||||||| |||| ||| ||| Sbjct 1347597 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACAA 1347656 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 |||| | |||| | | ||||||||| | ||||| || | || ||||| ||||| | Sbjct 1347657 GCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTGC 1347716 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC- 95289 | |||||||| ||| ||||| ||| || | |||||||| ||| | ||| Sbjct 1347717 TCAAAGACCTGACAGAGAGGGGCATGTGGAATGAGGAGATGAAGAACCAGCTGAT-CGCT 1347775 Query 95290 GCCAACGGCTCCGTCCAG 95307 ||| |||||| ||||| Sbjct 1347776 AACAATGGCTCCATCCAG 1347793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494666931420040