Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq38 127 2e-24 seq92 93.3 4e-14 >seq38 Length=4945250 Score = 127 bits (140), Expect = 2e-24 Identities = 483/741 (65%), Gaps = 34/741 (5%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| | ||||||||| || | ||| || || | || | |||||| ||| | | Sbjct 1347707 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 1347648 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||| ||||||||||| || || ||||| || || | || || ||||| | || Sbjct 1347647 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACA 1347588 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---GTAGTTTGGACCAAT 146239 ||||| ||| |||||||| ||| | ||||| ||| | || || ||| | Sbjct 1347587 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT---CCAGT 1347531 Query 146240 TCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACA 146299 ||||| | ||||| || | | | ||||||| || | | |||| || Sbjct 1347530 CCCACA---GGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCA 1347474 Query 146300 GGGGGCTATTCT-CGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGC 146357 || | | || |||||| ||||| | ||| | || |||||| |||||||| || Sbjct 1347473 CCGG-CGAGCCTTCGTACGTCTCATAGGTGCCGA-GCTCGGCGGCCAGCTCGCAGCTCGC 1347416 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCT 146416 ||||| ||| | | | || || ||||| |||| | ||||| || || ||||| Sbjct 1347415 TTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGA-GCAGTTGAGCCTCGG 1347357 Query 146417 CGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 ||| || |||| ||| || | ||| | ||||| || || | ||||| | ||||| Sbjct 1347356 GGCTTTCAAAGGG-ATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATT 1347298 Query 146476 CCAACGGGGCGGTGTTTCTTGTTA---CTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTG 146532 || | || | ||| | |||| || | || | || | | | |||| |||| Sbjct 1347297 CCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG---TAGTAGTTG 1347241 Query 146533 CTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACA 146592 ||||||| | |||||| | || | || | | ||| |||| ||| | || | Sbjct 1347240 ATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACG-GATGC--CA----A 1347188 Query 146593 TAGTCAAATGTTTTAGTT----TTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAA 146648 | | || || || | | | | ||||| || |||||| |||| |||||||| Sbjct 1347187 TTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAG 1347128 Query 146649 GTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCT 146708 || || || || |||||||||| |||| || || || | ||| |||||||| Sbjct 1347127 ATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCT 1347068 Query 146709 GCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAG 146768 |||||||||| |||||| ||| | ||||| || | ||||||||| || ||||||| Sbjct 1347067 GCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGAC 1347008 Query 146769 CATGTACGGTCCCCCGGTTTC 146789 ||||||||| ||||||||| Sbjct 1347007 CATGTACGGCGTCCCGGTTTC 1346987 >seq92 Length=2575742 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||| || | ||||| | Sbjct 2563984 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 2564043 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || ||||| ||||| Sbjct 2564044 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTA 2564103 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||||| | || | |||||| | ||| || || | ||| | Sbjct 2564104 TCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2564163 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| || || || || ||||| |||||||||||| Sbjct 2564164 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGGCT 2564202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475446717727760