Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq38 138 1e-27 seq65 86.0 6e-12 >seq38 Length=4945250 Score = 138 bits (152), Expect = 1e-27 Identities = 902/1445 (62%), Gaps = 28/1445 (2%) Strand=Plus/Plus Query 122885 AAAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGG 122944 ||| ||| | | || || || || ||| || || ||||||||| | || ||| | || Sbjct 1346263 AAAGATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGG 1346322 Query 122945 CGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATT 123004 | || || || ||| |||| || | ||| || ||| | || |||| | || | Sbjct 1346323 AATCCATGGGACAGATATCAAAAAAGCCATCGAGACCTACAACCTGCTGTCAGAGAAGTG 1346382 Query 123005 TTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTC 123064 ||||| ||||| || || | ||| || || || || ||| ||| |||| Sbjct 1346383 GTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAG 1346442 Query 123065 GTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA 123124 || || ||||| || || || ||||||||| || ||||| || || || | Sbjct 1346443 CTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTGAAGCA 1346502 Query 123125 TTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGG 123184 |||||| | || ||||||| | ||| || || |||||| || | | | ||| Sbjct 1346503 TTGCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTGCATTAGATC 1346562 Query 123185 CCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCG 123244 | || ||| |||| ||||| |||| || |||||||| | ||| || | Sbjct 1346563 CACGGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAG 1346622 Query 123245 AGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA------GGCGC 123298 |||||||| ||| | | ||| | || || ||||| ||||| |||| ||||| Sbjct 1346623 GGTTTACAACAACACAGCGCGTTATGTTGATCAGGGGGGCAA---CAAAAGACCCGGCGC 1346679 Query 123299 GATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACG 123358 | || || || || || || |||||| | ||||||| ||| ||| | | | || Sbjct 1346680 CTTCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTCGACTTTCTGGAGCTGAAGAA 1346739 Query 123359 CAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418 |||| ||| ||| || || |||| | || ||||| ||||| | ||| | || || Sbjct 1346740 GAACACGGGAAAGGAGGAGCAGCGAGCCAGGGACTTGTTCTACGCCCTGTGGATCCCTGA 1346799 Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG 123478 | || ||| || || | || || | ||||| || |||||||| | || Sbjct 1346800 CCTCTTCATGAAGCGGGTGGAGAACAACACAGACTGGTCCCTGATGTGTCCGGCCGACTG 1346859 Query 123479 TCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 ||||| || || | || | ||||||| || | ||| | ||| ||| | Sbjct 1346860 CCCCGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGATATGAGAG 1346919 Query 123539 CGAAGGCAAACAGGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGA 123595 || || | ||| | || ||| ||| | | | | | || ||||| Sbjct 1346920 GGAGGGGAG---GGTGAAGCGTGTGGTGAAGGCTCAGCAGCTATGGTATGCAATCATCGA 1346976 Query 123596 AACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAAC 123655 | || |||||||| |||||||||||| |||||||||| |||||||||||||| | Sbjct 1346977 GTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGAG 1347036 Query 123656 CAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| ||| || |||| || || || || || || |||||| | ||||| |||| || Sbjct 1347037 CAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGTA 1347096 Query 123716 C---AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTG 123772 | ||| | | || | ||||| || || ||| |||| || | | || | Sbjct 1347097 CACTAGCAAGGACG---AGGTGGCGGTTTGCAATCTGGCCTCTGTCGCTCTCAACATGTA 1347153 Query 123773 CGTCGAAAACG-GCG--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGT 123829 |||| | ||| ||| | | || ||| | | | | || ||| | || Sbjct 1347154 CGTCACCCCTGAGCGGACTTATGACTTTAAAAAATTGGCATCCGTGACCAAAGTAATTGT 1347213 Query 123830 AAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTC 123889 | ||| |||||||| ||||||| | || | || || |||| ||||| | ||| Sbjct 1347214 CAGGAACTTGAACAAGGTTATCGACATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTC 1347273 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 || || ||||| ||| | ||| | || | || || ||||| || || || | | Sbjct 1347274 GAACATGCGCCACAGGCCGATAGGAATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCT 1347333 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 |||| || | |||||| ||| || | |||| || | || || || || Sbjct 1347334 TATGCGTTATCCCTTTGAAAGCCCCGAGGCTCAACTGCTCAACATCCAGATCTTTGAGAC 1347393 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 ||| ||||| | ||||||||| ||||||||||| || || | |||| | || || Sbjct 1347394 AATGTATTATGCCGCTTTGGAAGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCACCTATGA 1347453 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 | |||| ||| |||| ||| || ||| | ||||||||||||||| | || Sbjct 1347454 GACGTACGAAGGCTCGCCGGTGAGTAAGGGCATTCTCCAGTACGACATGTGGGAGAAGAC 1347513 Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTG 124187 || || | |||||||||||| | | || | | | |||| | || || || Sbjct 1347514 GCCAACGGACCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACATGGCGTG 1347571 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 | ||| ||| || || | ||||| ||||| |||| || || || | || ||| Sbjct 1347572 AGGAACAGCCTGCTGCTGTCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAAC 1347631 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 ||||| ||| ||||| | | ||| | ||| | ||| || || ||| | | || || Sbjct 1347632 AACGAGTCCATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAG 1347691 Query 124308 TTTCA 124312 ||||| Sbjct 1347692 TTTCA 1347696 >seq65 Length=3759856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || || || || || || || ||||| ||||| || || ||| Sbjct 3001583 ATGCCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3001524 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || || | |||| | |||||||| || Sbjct 3001523 GACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGG 3001464 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || ||||| |||| || | |||||| | ||| Sbjct 3001463 GGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 3001404 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | || || || ||||| ||||| ||||| || ||||| Sbjct 3001403 ACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCAT 3001354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451951790286040